(19 nodes) Axon midline choice point recognition network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NIZ8	Sema domain-containing protein. (1513 aa)
	A0A158P2T5	eIF2B_5 domain-containing protein. (317 aa)
	A0A158NZB5	Uncharacterized protein. (1305 aa)
	A0A158NZ71	Uncharacterized protein. (8527 aa)
	A0A158NYR3	Uncharacterized protein. (737 aa)
	A0A158NWL2	Uncharacterized protein. (110 aa)
	A0A158NUM9	Uncharacterized protein. (1527 aa)
	A0A158NT81	Uncharacterized protein. (678 aa)
	A0A158NT80	C2H2-type domain-containing protein. (106 aa)
	A0A158NN86	Uncharacterized protein. (1427 aa)
	A0A158NLK1	SAC domain-containing protein. (583 aa)
	A0A158NJE6	W2 domain-containing protein. (420 aa)
	A0A158NJ88	Guanylate cyclase. (1431 aa)
	A0A158NIL3	Uncharacterized protein. (2433 aa)
	A0A158NHG4	Uncharacterized protein. (1209 aa)
	A0A158NGS2	Spectrin beta chain; Belongs to the spectrin family. (2400 aa)
	A0A158NEC9	Uncharacterized protein. (1168 aa)
	A0A158NDK7	E3 ubiquitin-protein ligase. (872 aa)
	A0A158NCN5	Uncharacterized protein. (1433 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NCN5	A0A158NN86	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A158NCN5	A0A158NUM9	Uncharacterized protein.	Uncharacterized protein.	0.611
A0A158NEC9	A0A158NN86	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A158NGS2	A0A158NIL3	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.931
A0A158NHG4	A0A158NN86	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A158NIL3	A0A158NGS2	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.931
A0A158NIL3	A0A158NZ71	Uncharacterized protein.	Uncharacterized protein.	0.591
A0A158NN86	A0A158NCN5	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A158NN86	A0A158NEC9	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A158NN86	A0A158NHG4	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A158NN86	A0A158NUM9	Uncharacterized protein.	Uncharacterized protein.	0.690
A0A158NN86	A0A158NYR3	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A158NUM9	A0A158NCN5	Uncharacterized protein.	Uncharacterized protein.	0.611
A0A158NUM9	A0A158NN86	Uncharacterized protein.	Uncharacterized protein.	0.690
A0A158NYR3	A0A158NN86	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A158NZ71	A0A158NIL3	Uncharacterized protein.	Uncharacterized protein.	0.591