(20 nodes) Cortical cytoskeleton network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NPC7	Uncharacterized protein. (1110 aa)
	A0A158NQ35	Uncharacterized protein. (2196 aa)
	A0A158NQD5	Uncharacterized protein. (1561 aa)
	A0A158NNL7	WD_REPEATS_REGION domain-containing protein. (602 aa)
	A0A158NLD0	ZZ-type domain-containing protein. (639 aa)
	A0A158NJ82	Uncharacterized protein. (910 aa)
	A0A158NIL3	Uncharacterized protein. (2433 aa)
	A0A158NGS2	Spectrin beta chain; Belongs to the spectrin family. (2400 aa)
	A0A158NEM0	Uncharacterized protein. (838 aa)
	A0A158NE51	Uncharacterized protein. (1001 aa)
	A0A158NE49	Uncharacterized protein. (3238 aa)
	A0A158ND59	Uncharacterized protein. (360 aa)
	A0A158NCX4	CCDC144C domain-containing protein. (1790 aa)
	A0A158NC26	Uncharacterized protein. (1490 aa)
	A0A158NBA0	Uncharacterized protein. (696 aa)
	A0A158NB99	Uncharacterized protein. (1380 aa)
	A0A158N9T2	Uncharacterized protein. (2699 aa)
	A0A158NWT3	Uncharacterized protein. (133 aa)
	A0A158NY32	PH domain-containing protein. (1198 aa)
	A0A158NZY7	Uncharacterized protein. (391 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NB99	A0A158NC26	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A158NB99	A0A158NPC7	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A158NB99	A0A158NQ35	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A158NB99	A0A158NWT3	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A158NBA0	A0A158NC26	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A158NBA0	A0A158NPC7	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A158NBA0	A0A158NQ35	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A158NBA0	A0A158NWT3	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A158NC26	A0A158NB99	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A158NC26	A0A158NBA0	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A158NC26	A0A158NPC7	Uncharacterized protein.	Uncharacterized protein.	0.963
A0A158NC26	A0A158NQ35	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A158NC26	A0A158NWT3	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A158NCX4	A0A158NPC7	CCDC144C domain-containing protein.	Uncharacterized protein.	0.539
A0A158NCX4	A0A158NQ35	CCDC144C domain-containing protein.	Uncharacterized protein.	0.854
A0A158NCX4	A0A158NWT3	CCDC144C domain-containing protein.	Uncharacterized protein.	0.854
A0A158NE49	A0A158NE51	Uncharacterized protein.	Uncharacterized protein.	0.740
A0A158NE49	A0A158NJ82	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A158NE51	A0A158NE49	Uncharacterized protein.	Uncharacterized protein.	0.740
A0A158NE51	A0A158NJ82	Uncharacterized protein.	Uncharacterized protein.	0.442