(34 nodes) Retrograde transport, endosome to Golgi network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NAU7	Uncharacterized protein. (381 aa)
	A0A158P2E0	Uncharacterized protein. (971 aa)
	A0A158P283	PX domain-containing protein. (510 aa)
	A0A158P1S9	Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (203 aa)
	A0A158P1G8	Vps53_N domain-containing protein. (834 aa)
	A0A158P0X6	Uncharacterized protein. (140 aa)
	A0A158NZ28	t-SNARE coiled-coil homology domain-containing protein. (231 aa)
	A0A158NYZ4	t-SNARE coiled-coil homology domain-containing protein. (289 aa)
	A0A158NW37	Uncharacterized protein. (114 aa)
	A0A158NV20	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (213 aa)
	A0A158NUW6	PX domain-containing protein. (163 aa)
	A0A158NUC6	Uncharacterized protein. (398 aa)
	A0A158NT23	Uncharacterized protein. (2486 aa)
	A0A158NSE5	Uncharacterized protein. (299 aa)
	A0A158NRR8	WH2 domain-containing protein. (493 aa)
	A0A158NQG2	PH domain-containing protein. (215 aa)
	A0A158NN99	Uncharacterized protein. (2089 aa)
	A0A158NMH8	Uncharacterized protein. (211 aa)
	A0A158NLJ4	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (803 aa)
	A0A158NKS3	CAP-ZIP_m domain-containing protein. (1643 aa)
	A0A158NKL6	Uncharacterized protein. (514 aa)
	A0A158NK92	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	A0A158NK85	Uncharacterized protein. (665 aa)
	A0A158NJ95	Uncharacterized protein. (967 aa)
	A0A158NIK9	Uncharacterized protein. (238 aa)
	A0A158NI73	Uncharacterized protein. (524 aa)
	A0A158NHT2	Uncharacterized protein. (253 aa)
	A0A158NDS6	Sorting nexin; Involved in several stages of intracellular trafficking. (414 aa)
	A0A158NDR7	Foie-gras_1 domain-containing protein. (1180 aa)
	A0A158NDQ4	Uncharacterized protein. (1889 aa)
	A0A158NCP9	RIC1 domain-containing protein. (1416 aa)
	A0A158NCJ7	PH domain-containing protein. (188 aa)
	A0A158NC78	Uncharacterized protein. (381 aa)
	A0A158NBI5	Uncharacterized protein. (673 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NAU7	A0A158NDS6	Uncharacterized protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.721
A0A158NAU7	A0A158NIK9	Uncharacterized protein.	Uncharacterized protein.	0.660
A0A158NAU7	A0A158NKL6	Uncharacterized protein.	Uncharacterized protein.	0.707
A0A158NAU7	A0A158NKS3	Uncharacterized protein.	CAP-ZIP_m domain-containing protein.	0.570
A0A158NAU7	A0A158NLJ4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
A0A158NAU7	A0A158NMH8	Uncharacterized protein.	Uncharacterized protein.	0.416
A0A158NAU7	A0A158NSE5	Uncharacterized protein.	Uncharacterized protein.	0.536
A0A158NAU7	A0A158NUW6	Uncharacterized protein.	PX domain-containing protein.	0.987
A0A158NAU7	A0A158NV20	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.999
A0A158NAU7	A0A158P283	Uncharacterized protein.	PX domain-containing protein.	0.984
A0A158NBI5	A0A158NUW6	Uncharacterized protein.	PX domain-containing protein.	0.408
A0A158NC78	A0A158NCP9	Uncharacterized protein.	RIC1 domain-containing protein.	0.967
A0A158NC78	A0A158NK85	Uncharacterized protein.	Uncharacterized protein.	0.713
A0A158NC78	A0A158NMH8	Uncharacterized protein.	Uncharacterized protein.	0.842
A0A158NC78	A0A158NUC6	Uncharacterized protein.	Uncharacterized protein.	0.647
A0A158NC78	A0A158NW37	Uncharacterized protein.	Uncharacterized protein.	0.462
A0A158NC78	A0A158NYZ4	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.532
A0A158NC78	A0A158NZ28	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.547
A0A158NC78	A0A158P1G8	Uncharacterized protein.	Vps53_N domain-containing protein.	0.722
A0A158NC78	A0A158P2E0	Uncharacterized protein.	Uncharacterized protein.	0.700