(18 nodes) Dendrite self-avoidance network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NA62	Uncharacterized protein. (893 aa)
	A0A158NBM2	Vang-like protein. (573 aa)
	A0A158ND59	Uncharacterized protein. (360 aa)
	A0A158NEI2	Uncharacterized protein; Belongs to the protein kinase superfamily. (497 aa)
	A0A158NFB0	Uncharacterized protein. (1973 aa)
	A0A158NJC3	Uncharacterized protein. (2283 aa)
	A0A158NLJ8	Uncharacterized protein. (2025 aa)
	A0A158NRT3	Uncharacterized protein. (192 aa)
	A0A158NPV8	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (3173 aa)
	A0A158NQW5	Uncharacterized protein. (1228 aa)
	A0A158NQZ9	Sema domain-containing protein. (2034 aa)
	A0A158NVD2	Uncharacterized protein. (126 aa)
	A0A158NVD3	Uncharacterized protein. (1464 aa)
	A0A158NYW2	Uncharacterized protein. (678 aa)
	A0A158NZB5	Uncharacterized protein. (1305 aa)
	A0A158NZK1	Uncharacterized protein. (2080 aa)
	A0A158NZR2	Uncharacterized protein. (1932 aa)
	A0A158P175	Uncharacterized protein. (3137 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NA62	A0A158NQW5	Uncharacterized protein.	Uncharacterized protein.	0.690
A0A158NBM2	A0A158NPV8	Vang-like protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.755
A0A158NBM2	A0A158NRT3	Vang-like protein.	Uncharacterized protein.	0.676
A0A158NEI2	A0A158NRT3	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.409
A0A158NEI2	A0A158P175	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.950
A0A158NPV8	A0A158NBM2	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Vang-like protein.	0.755
A0A158NQW5	A0A158NA62	Uncharacterized protein.	Uncharacterized protein.	0.690
A0A158NQZ9	A0A158NRT3	Sema domain-containing protein.	Uncharacterized protein.	0.592
A0A158NRT3	A0A158NBM2	Uncharacterized protein.	Vang-like protein.	0.676
A0A158NRT3	A0A158NEI2	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.409
A0A158NRT3	A0A158NQZ9	Uncharacterized protein.	Sema domain-containing protein.	0.592
A0A158P175	A0A158NEI2	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.950