(14 nodes) PAS domain network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NFQ5	Uncharacterized protein. (995 aa)
	A0A158NFP5	Uncharacterized protein. (904 aa)
	A0A158NDT4	Uncharacterized protein. (1154 aa)
	A0A158NIX6	Uncharacterized protein. (918 aa)
	A0A158NHX9	Uncharacterized protein. (1503 aa)
	A0A158NKG8	Uncharacterized protein. (667 aa)
	A0A158NKS2	Uncharacterized protein. (1114 aa)
	A0A158NNS1	Uncharacterized protein. (842 aa)
	A0A158NPH7	Uncharacterized protein. (787 aa)
	A0A158NPZ9	Uncharacterized protein. (1592 aa)
	A0A158NRN3	Uncharacterized protein. (949 aa)
	A0A158P025	Uncharacterized protein. (730 aa)
	A0A158P0G0	Uncharacterized protein; Belongs to the cyclic nucleotide phosphodiesterase family. (851 aa)
	A0A158P2D5	Uncharacterized protein. (766 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NFP5	A0A158NHX9	Uncharacterized protein.	Uncharacterized protein.	0.590
A0A158NFP5	A0A158NIX6	Uncharacterized protein.	Uncharacterized protein.	0.601
A0A158NFP5	A0A158NKG8	Uncharacterized protein.	Uncharacterized protein.	0.705
A0A158NFP5	A0A158NKS2	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A158NFP5	A0A158NNS1	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A158NFP5	A0A158NPH7	Uncharacterized protein.	Uncharacterized protein.	0.447
A0A158NFP5	A0A158NRN3	Uncharacterized protein.	Uncharacterized protein.	0.731
A0A158NFP5	A0A158P2D5	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A158NHX9	A0A158NFP5	Uncharacterized protein.	Uncharacterized protein.	0.590
A0A158NHX9	A0A158NNS1	Uncharacterized protein.	Uncharacterized protein.	0.602
A0A158NHX9	A0A158NPZ9	Uncharacterized protein.	Uncharacterized protein.	0.672
A0A158NHX9	A0A158P025	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A158NHX9	A0A158P2D5	Uncharacterized protein.	Uncharacterized protein.	0.590
A0A158NIX6	A0A158NFP5	Uncharacterized protein.	Uncharacterized protein.	0.601
A0A158NIX6	A0A158NNS1	Uncharacterized protein.	Uncharacterized protein.	0.590
A0A158NIX6	A0A158NPZ9	Uncharacterized protein.	Uncharacterized protein.	0.590
A0A158NIX6	A0A158P025	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A158NIX6	A0A158P2D5	Uncharacterized protein.	Uncharacterized protein.	0.601
A0A158NKG8	A0A158NFP5	Uncharacterized protein.	Uncharacterized protein.	0.705
A0A158NKG8	A0A158NNS1	Uncharacterized protein.	Uncharacterized protein.	0.875