(38 nodes) RNA Pol II CTD phosphorylation and interaction with CE network (Atta cephalotes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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experimentally determined

Predicted Interactions

gene neighborhood

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Your Input:
	A0A158NGZ4	RPOLD domain-containing protein. (276 aa)
	A0A158NG74	Uncharacterized protein. (180 aa)
	A0A158NHC5	Uncharacterized protein. (292 aa)
	A0A158NUL6	RPOL4c domain-containing protein. (128 aa)
	A0A158NS92	mRNA cap guanine-N7 methyltransferase. (454 aa)
	A0A158NS48	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
	A0A158NQ41	Uncharacterized protein. (57 aa)
	A0A158NFI5	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (320 aa)
	A0A158NEL2	Uncharacterized protein. (210 aa)
	A0A158NE98	Uncharacterized protein. (67 aa)
	A0A158NCY3	CYCLIN domain-containing protein; Belongs to the cyclin family. (331 aa)
	A0A158NAH2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (271 aa)
	A0A158NAG9	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (535 aa)
	A0A158N948	Uncharacterized protein. (618 aa)
	A0A158N912	Helicase ATP-binding domain-containing protein. (735 aa)
	A0A158NQ39	Uncharacterized protein. (61 aa)
	A0A158NVT3	Uncharacterized protein. (73 aa)
	A0A158NVZ4	General transcription factor IIH subunit. (414 aa)
	A0A158NVF4	Uncharacterized protein. (796 aa)
	A0A158P1X1	RNA_pol_L_2 domain-containing protein. (117 aa)
	A0A158P1W3	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	A0A158NZ92	DUF2236 domain-containing protein. (484 aa)
	A0A158NZ08	Transcription elongation factor SPT5. (1029 aa)
	A0A158NYZ9	Transcription elongation factor SPT5. (1112 aa)
	A0A158NYE4	TYR_PHOSPHATASE_2 domain-containing protein. (412 aa)
	A0A158NY57	Uncharacterized protein. (282 aa)
	A0A158NY56	DUF2236 domain-containing protein. (376 aa)
	A0A158NW93	DUF2236 domain-containing protein. (468 aa)
	A0A158NWG5	DUF2236 domain-containing protein. (234 aa)
	A0A158NWZ8	Uncharacterized protein. (135 aa)
	A0A158NNK2	Uncharacterized protein. (130 aa)
	A0A158NNC9	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (592 aa)
	A0A158NMV7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1178 aa)
	A0A158NKD0	R3H domain-containing protein. (232 aa)
	A0A158NJC0	Uncharacterized protein. (187 aa)
	A0A158NIT5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (151 aa)
	A0A158NID1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (338 aa)
	A0A158NHY9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1906 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158N912	A0A158N948	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.999
A0A158N912	A0A158NAG9	Helicase ATP-binding domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.967
A0A158N912	A0A158NAH2	Helicase ATP-binding domain-containing protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.949
A0A158N912	A0A158NCY3	Helicase ATP-binding domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.995
A0A158N912	A0A158NE98	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.947
A0A158N912	A0A158NEL2	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.953
A0A158N912	A0A158NFI5	Helicase ATP-binding domain-containing protein.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.999
A0A158N912	A0A158NG74	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.943
A0A158N912	A0A158NGZ4	Helicase ATP-binding domain-containing protein.	RPOLD domain-containing protein.	0.960
A0A158N912	A0A158NHC5	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.999
A0A158N912	A0A158NHY9	Helicase ATP-binding domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.953
A0A158N912	A0A158NID1	Helicase ATP-binding domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.933
A0A158N912	A0A158NIT5	Helicase ATP-binding domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.949
A0A158N912	A0A158NJC0	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.606
A0A158N912	A0A158NMV7	Helicase ATP-binding domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.954
A0A158N912	A0A158NNK2	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.947
A0A158N912	A0A158NQ39	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.855
A0A158N912	A0A158NQ41	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.855
A0A158N912	A0A158NS48	Helicase ATP-binding domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.951
A0A158N912	A0A158NVF4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.999