(5 nodes) Domain B in dwarfin family proteins network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NI66	Mothers against decapentaplegic homolog. (469 aa)
	A0A158NKR5	MH2 domain-containing protein. (240 aa)
	A0A158NLE2	Mothers against decapentaplegic homolog. (393 aa)
	A0A158NVW1	Mothers against decapentaplegic homolog. (477 aa)
	A0A158NWM7	MH2 domain-containing protein. (417 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NI66	A0A158NLE2	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.938
A0A158NI66	A0A158NWM7	Mothers against decapentaplegic homolog.	MH2 domain-containing protein.	0.973
A0A158NLE2	A0A158NI66	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.938
A0A158NLE2	A0A158NVW1	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.938
A0A158NLE2	A0A158NWM7	Mothers against decapentaplegic homolog.	MH2 domain-containing protein.	0.505
A0A158NVW1	A0A158NLE2	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.938
A0A158NVW1	A0A158NWM7	Mothers against decapentaplegic homolog.	MH2 domain-containing protein.	0.979
A0A158NWM7	A0A158NI66	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.973
A0A158NWM7	A0A158NLE2	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.505
A0A158NWM7	A0A158NVW1	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.979