(8 nodes) Acyl chain remodelling of PE network (Kwoniella dejecticola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I303_06391	AB hydrolase-1 domain-containing protein. (288 aa)
	I303_07454	Cardiolipin-specific phospholipase. (586 aa)
	I303_07074	Uncharacterized protein. (668 aa)
	I303_07948	Lysophospholipase. (658 aa)
	I303_07951	PLA2c domain-containing protein. (161 aa)
	I303_04364	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family. (594 aa)
	I303_04187	Uncharacterized protein. (390 aa)
	I303_05216	JmjC domain-containing protein. (359 aa)

Your Current Organism:

Kwoniella dejecticola

NCBI taxonomy Id: 1296121
Other names: Cryptococcus dejecticola CBS 10117, K. dejecticola CBS 10117, Kwoniella dejecticola CBS 10117

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I303_04187	I303_04364	A0A1A6A486	A0A1A6A4P8	Uncharacterized protein.	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.	0.913
I303_04187	I303_05216	A0A1A6A486	A0A1A6A2S6	Uncharacterized protein.	JmjC domain-containing protein.	0.553
I303_04187	I303_07948	A0A1A6A486	A0A1A5ZW62	Uncharacterized protein.	Lysophospholipase.	0.553
I303_04187	I303_07951	A0A1A6A486	A0A1A5ZW57	Uncharacterized protein.	PLA2c domain-containing protein.	0.553
I303_04364	I303_04187	A0A1A6A4P8	A0A1A6A486	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.913
I303_04364	I303_05216	A0A1A6A4P8	A0A1A6A2S6	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.	JmjC domain-containing protein.	0.664
I303_04364	I303_07948	A0A1A6A4P8	A0A1A5ZW62	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.	Lysophospholipase.	0.802
I303_04364	I303_07951	A0A1A6A4P8	A0A1A5ZW57	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.	PLA2c domain-containing protein.	0.664
I303_05216	I303_04187	A0A1A6A2S6	A0A1A6A486	JmjC domain-containing protein.	Uncharacterized protein.	0.553
I303_05216	I303_04364	A0A1A6A2S6	A0A1A6A4P8	JmjC domain-containing protein.	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.	0.664
I303_07948	I303_04187	A0A1A5ZW62	A0A1A6A486	Lysophospholipase.	Uncharacterized protein.	0.553
I303_07948	I303_04364	A0A1A5ZW62	A0A1A6A4P8	Lysophospholipase.	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.	0.802
I303_07951	I303_04187	A0A1A5ZW57	A0A1A6A486	PLA2c domain-containing protein.	Uncharacterized protein.	0.553
I303_07951	I303_04364	A0A1A5ZW57	A0A1A6A4P8	PLA2c domain-containing protein.	Lysophospholipid acyltransferase; Belongs to the membrane-bound acyltransferase family.	0.664