(12 nodes) Aspartate and asparagine metabolism network (Kwoniella dejecticola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I303_02230	N-acetyltransferase domain-containing protein. (214 aa)
	I303_07619	Asparaginase. (389 aa)
	I303_07635	Aspartate aminotransferase. (416 aa)
	I303_07644	Aspartate aminotransferase. (429 aa)
	I303_08091	Aspartate aminotransferase. (680 aa)
	I303_07344	Zn(2)-C6 fungal-type domain-containing protein. (971 aa)
	I303_04439	Membrane protein. (915 aa)
	I303_03025	Asparagine synthase (Glutamine-hydrolyzing). (590 aa)
	I303_02229	N-acetyltransferase domain-containing protein. (196 aa)
	I303_00569	N-acetyltransferase domain-containing protein. (223 aa)
	I303_01180	Solute carrier family 25 (Mitochondrial aspartate/glutamate transporter), member 12/13; Belongs to the mitochondrial carrier (TC 2.A.29) family. (695 aa)
	I303_01426	Uncharacterized protein. (384 aa)

Your Current Organism:

Kwoniella dejecticola

NCBI taxonomy Id: 1296121
Other names: Cryptococcus dejecticola CBS 10117, K. dejecticola CBS 10117, Kwoniella dejecticola CBS 10117

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I303_00569	I303_08091	A0A1A6AFA0	A0A1A5ZWJ4	N-acetyltransferase domain-containing protein.	Aspartate aminotransferase.	0.517
I303_01426	I303_03025	A0A1A6AHP7	A0A1A6AAB9	Uncharacterized protein.	Asparagine synthase (Glutamine-hydrolyzing).	0.821
I303_01426	I303_07344	A0A1A6AHP7	A0A1A5ZXP7	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.485
I303_01426	I303_07635	A0A1A6AHP7	A0A1A5ZV94	Uncharacterized protein.	Aspartate aminotransferase.	0.650
I303_01426	I303_07644	A0A1A6AHP7	A0A1A5ZVA0	Uncharacterized protein.	Aspartate aminotransferase.	0.788
I303_01426	I303_08091	A0A1A6AHP7	A0A1A5ZWJ4	Uncharacterized protein.	Aspartate aminotransferase.	0.788
I303_02229	I303_08091	A0A1A6AD92	A0A1A5ZWJ4	N-acetyltransferase domain-containing protein.	Aspartate aminotransferase.	0.517
I303_02230	I303_08091	A0A1A6AD86	A0A1A5ZWJ4	N-acetyltransferase domain-containing protein.	Aspartate aminotransferase.	0.517
I303_03025	I303_01426	A0A1A6AAB9	A0A1A6AHP7	Asparagine synthase (Glutamine-hydrolyzing).	Uncharacterized protein.	0.821
I303_03025	I303_07344	A0A1A6AAB9	A0A1A5ZXP7	Asparagine synthase (Glutamine-hydrolyzing).	Zn(2)-C6 fungal-type domain-containing protein.	0.680
I303_03025	I303_07619	A0A1A6AAB9	A0A1A5ZV77	Asparagine synthase (Glutamine-hydrolyzing).	Asparaginase.	0.705
I303_03025	I303_07635	A0A1A6AAB9	A0A1A5ZV94	Asparagine synthase (Glutamine-hydrolyzing).	Aspartate aminotransferase.	0.814
I303_03025	I303_07644	A0A1A6AAB9	A0A1A5ZVA0	Asparagine synthase (Glutamine-hydrolyzing).	Aspartate aminotransferase.	0.825
I303_03025	I303_08091	A0A1A6AAB9	A0A1A5ZWJ4	Asparagine synthase (Glutamine-hydrolyzing).	Aspartate aminotransferase.	0.820
I303_07344	I303_01426	A0A1A5ZXP7	A0A1A6AHP7	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.485
I303_07344	I303_03025	A0A1A5ZXP7	A0A1A6AAB9	Zn(2)-C6 fungal-type domain-containing protein.	Asparagine synthase (Glutamine-hydrolyzing).	0.680
I303_07344	I303_07619	A0A1A5ZXP7	A0A1A5ZV77	Zn(2)-C6 fungal-type domain-containing protein.	Asparaginase.	0.485
I303_07344	I303_08091	A0A1A5ZXP7	A0A1A5ZWJ4	Zn(2)-C6 fungal-type domain-containing protein.	Aspartate aminotransferase.	0.862
I303_07619	I303_03025	A0A1A5ZV77	A0A1A6AAB9	Asparaginase.	Asparagine synthase (Glutamine-hydrolyzing).	0.705
I303_07619	I303_07344	A0A1A5ZV77	A0A1A5ZXP7	Asparaginase.	Zn(2)-C6 fungal-type domain-containing protein.	0.485