(45 nodes) Mixed, incl. Lysine degradation, and Short chain fatty acid transporter AtoE network (Intestinimonas butyriciproducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALP92686.1	Metal-dependent hydrolase. (163 aa)
	ALP92690.1	3-keto-5-aminohexanoate cleavage enzyme. (273 aa)
	ALP93367.1	Lysine fermentation protein. (333 aa)
	ALP93369.1	3-aminobutyryl-CoA ammonia-lyase. (131 aa)
	ALP93370.1	3-keto-5-aminohexanoate cleavage enzyme. (272 aa)
	ALP93371.1	Hypothetical protein. (44 aa)
	ALP93372.1	3,5-diaminobexanoate dehydrogenase. (346 aa)
	ALP93373.1	Lysine 2,3-aminomutase. (423 aa)
	ALP93374.1	L-beta-lysine 5,6-aminomutase alpha subunit. (521 aa)
	ALP93375.1	L-beta-lysine 5,6-aminomutase beta subunit. (263 aa)
	ALP93376.1	Metal-dependent hydrolase. (215 aa)
	ALP93377.1	Hypothetical protein. (51 aa)
	ALP93379.1	Hypothetical protein. (59 aa)
	ALP94138.1	Short chain fatty acids transporter. (447 aa)
	ALP94139.1	Hypothetical protein. (277 aa)
	ALP94733.1	3-keto-5-aminohexanoate cleavage enzyme. (281 aa)
	ALP94812.1	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B. (214 aa)
	ALP94813.1	Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit. (217 aa)
	ALP94814.1	Hypothetical protein. (412 aa)
	ALP94816.1	Hypothetical protein. (292 aa)
	ALP94817.1	D-beta-hydroxybutyrate permease. (447 aa)
	ALP94818.1	Formate hydrogenlyase transcriptional activator. (470 aa)
	ALP94819.1	Hypothetical protein. (44 aa)
	ALP94821.1	Acylamino-acid-releasing enzyme. (663 aa)
	ALP95367.1	Butyrate-acetoacetate CoA-transferase subunit A. (218 aa)
	ALP95368.1	Butyrate-acetoacetate CoA-transferase subunit B. (216 aa)
	ALP95372.1	3-keto-5-aminohexanoate cleavage enzyme. (283 aa)
	ALP95373.1	Short chain fatty acids transporter. (451 aa)
	ALP95473.1	Short chain fatty acids transporter. (450 aa)
	ALP95522.1	Butyrate-acetoacetate CoA-transferase subunit B. (217 aa)
	ALP95523.1	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A. (223 aa)
	ALP95581.1	Hypothetical protein. (339 aa)
	ALP95582.1	2,4-dienoyl-CoA reductase. (657 aa)
	ALP95583.1	3-keto-5-aminohexanoate cleavage enzyme. (270 aa)
	ALP95584.1	Hypothetical protein. (107 aa)
	ALP95591.1	Branched-chain amino acid transport. (123 aa)
	ALP95592.1	Branched-chain amino acid transport protein azlC. (236 aa)
	ALP95593.1	Hypothetical protein. (46 aa)
	ALP95594.1	Transcription regulator; Contains diacylglycerol kinase catalytic domain. (297 aa)
	ALP95595.1	Response regulator of zinc sigma-54-dependent two-component system. (496 aa)
	ALP95596.1	3-keto-5-aminohexanoate cleavage enzyme. (296 aa)
	ALP95597.1	Hypothetical protein. (56 aa)
	ALP95599.1	Short chain fatty acids transporter. (464 aa)
	ALP95727.1	Butyrate-acetoacetate CoA-transferase subunit A. (228 aa)
	ALP95728.1	Butyrate-acetoacetate CoA-transferase subunit B. (220 aa)

Your Current Organism:

Intestinimonas butyriciproducens

NCBI taxonomy Id: 1297617
Other names: CCUG 63529, Candidatus Clostridium anorexicus, DSM 26588, I. butyriciproducens, Intestinimonas butyriciproducens Klaring et al. 2013, Pseudoflavonifractor sp. 2-1.1, Pseudoflavonifractor sp. SRB-521-5-I, strain SRB-521-5-I

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALP92686.1	ALP92690.1	IB211_00290	IB211_00294	Metal-dependent hydrolase.	3-keto-5-aminohexanoate cleavage enzyme.	0.549
ALP92686.1	ALP93376.1	IB211_00290	IB211_00983c	Metal-dependent hydrolase.	Metal-dependent hydrolase.	0.578
ALP92690.1	ALP92686.1	IB211_00294	IB211_00290	3-keto-5-aminohexanoate cleavage enzyme.	Metal-dependent hydrolase.	0.549
ALP92690.1	ALP93369.1	IB211_00294	IB211_00976	3-keto-5-aminohexanoate cleavage enzyme.	3-aminobutyryl-CoA ammonia-lyase.	0.963
ALP92690.1	ALP93372.1	IB211_00294	IB211_00979	3-keto-5-aminohexanoate cleavage enzyme.	3,5-diaminobexanoate dehydrogenase.	0.929
ALP92690.1	ALP94812.1	IB211_00294	IB211_02421c	3-keto-5-aminohexanoate cleavage enzyme.	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.	0.663
ALP92690.1	ALP94813.1	IB211_00294	IB211_02422c	3-keto-5-aminohexanoate cleavage enzyme.	Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit.	0.664
ALP92690.1	ALP95367.1	IB211_00294	IB211_02976	3-keto-5-aminohexanoate cleavage enzyme.	Butyrate-acetoacetate CoA-transferase subunit A.	0.664
ALP92690.1	ALP95368.1	IB211_00294	IB211_02977	3-keto-5-aminohexanoate cleavage enzyme.	Butyrate-acetoacetate CoA-transferase subunit B.	0.663
ALP92690.1	ALP95522.1	IB211_00294	IB211_03131c	3-keto-5-aminohexanoate cleavage enzyme.	Butyrate-acetoacetate CoA-transferase subunit B.	0.663
ALP92690.1	ALP95523.1	IB211_00294	IB211_03132c	3-keto-5-aminohexanoate cleavage enzyme.	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.	0.664
ALP92690.1	ALP95727.1	IB211_00294	IB211_03339	3-keto-5-aminohexanoate cleavage enzyme.	Butyrate-acetoacetate CoA-transferase subunit A.	0.664
ALP92690.1	ALP95728.1	IB211_00294	IB211_03340	3-keto-5-aminohexanoate cleavage enzyme.	Butyrate-acetoacetate CoA-transferase subunit B.	0.663
ALP93367.1	ALP93369.1	IB211_00974	IB211_00976	Lysine fermentation protein.	3-aminobutyryl-CoA ammonia-lyase.	0.880
ALP93367.1	ALP93370.1	IB211_00974	IB211_00977	Lysine fermentation protein.	3-keto-5-aminohexanoate cleavage enzyme.	0.664
ALP93367.1	ALP93372.1	IB211_00974	IB211_00979	Lysine fermentation protein.	3,5-diaminobexanoate dehydrogenase.	0.832
ALP93367.1	ALP93373.1	IB211_00974	IB211_00980	Lysine fermentation protein.	Lysine 2,3-aminomutase.	0.637
ALP93367.1	ALP93374.1	IB211_00974	IB211_00981	Lysine fermentation protein.	L-beta-lysine 5,6-aminomutase alpha subunit.	0.832
ALP93367.1	ALP93375.1	IB211_00974	IB211_00982	Lysine fermentation protein.	L-beta-lysine 5,6-aminomutase beta subunit.	0.832
ALP93369.1	ALP92690.1	IB211_00976	IB211_00294	3-aminobutyryl-CoA ammonia-lyase.	3-keto-5-aminohexanoate cleavage enzyme.	0.963

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