STRINGSTRING
pnp pnp rny rny ALP92828.1 ALP92828.1 ALP92836.1 ALP92836.1 ALP93506.1 ALP93506.1 ALP93821.1 ALP93821.1 rnhB rnhB rnhA rnhA ALP94011.1 ALP94011.1 xseB xseB xseA xseA ALP94550.1 ALP94550.1 rph rph ALP95180.1 ALP95180.1 ALP95339.1 ALP95339.1 ALP95563.1 ALP95563.1 ALP95564.1 ALP95564.1 ALP95720.1 ALP95720.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (713 aa)
rnyHydrolase (HAD superfamily); Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (562 aa)
ALP92828.1Hypothetical protein. (272 aa)
ALP92836.1L-alanine-DL-glutamate epimerase. (362 aa)
ALP93506.1Cytotoxic translational repressor of toxin-antitoxin stability system. (92 aa)
ALP93821.1Lyzozyme M1 (1,4-beta-N-acetylmuramidase). (253 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (206 aa)
rnhARibonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (146 aa)
ALP94011.1Protein YicC. (292 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (77 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (404 aa)
ALP94550.1Acetyltransferase. (120 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa)
ALP95180.1YafQ toxin protein. (96 aa)
ALP95339.1Peptidoglycan N-acetylglucosamine deacetylase. (259 aa)
ALP95563.1Polysaccharide deacetylase. (290 aa)
ALP95564.1Polysaccharide deacetylase. (275 aa)
ALP95720.1HD family hydrolase, diverged. (168 aa)
Your Current Organism:
Intestinimonas butyriciproducens
NCBI taxonomy Id: 1297617
Other names: CCUG 63529, Candidatus Clostridium anorexicus, DSM 26588, I. butyriciproducens, Intestinimonas butyriciproducens Klaring et al. 2013, Pseudoflavonifractor sp. 2-1.1, Pseudoflavonifractor sp. SRB-521-5-I, strain SRB-521-5-I
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