(7 nodes) Mixed, incl. Large ribosomal subunit rRNA binding, and Translation regulation network (Bacteroides luti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplL	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (124 aa)
	SHF63569.1	LSU ribosomal protein L10P. (170 aa)
	rplA	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (232 aa)
	rplK	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (147 aa)
	rpsP	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. (180 aa)
	rpsI	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (128 aa)
	rplM	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (153 aa)

Your Current Organism:

Bacteroides luti

NCBI taxonomy Id: 1297750
Other names: B. luti, Bacteroides luti Hatamoto et al. 2014, Bacteroides sp. UasXn-3, DSM 26991, JCM 19020, strain UasXn-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHF63569.1	rplA	SAMN05444405_111102	SAMN05444405_111103	LSU ribosomal protein L10P.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.999
SHF63569.1	rplK	SAMN05444405_111102	SAMN05444405_111104	LSU ribosomal protein L10P.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.997
SHF63569.1	rplL	SAMN05444405_111102	SAMN05444405_111101	LSU ribosomal protein L10P.	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.996
SHF63569.1	rplM	SAMN05444405_111102	SAMN05444405_11742	LSU ribosomal protein L10P.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
SHF63569.1	rpsI	SAMN05444405_111102	SAMN05444405_11741	LSU ribosomal protein L10P.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.986
SHF63569.1	rpsP	SAMN05444405_111102	SAMN05444405_1135	LSU ribosomal protein L10P.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.984
rplA	SHF63569.1	SAMN05444405_111103	SAMN05444405_111102	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	LSU ribosomal protein L10P.	0.999
rplA	rplK	SAMN05444405_111103	SAMN05444405_111104	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.999
rplA	rplL	SAMN05444405_111103	SAMN05444405_111101	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.997
rplA	rplM	SAMN05444405_111103	SAMN05444405_11742	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.996
rplA	rpsI	SAMN05444405_111103	SAMN05444405_11741	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.989
rplA	rpsP	SAMN05444405_111103	SAMN05444405_1135	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.989
rplK	SHF63569.1	SAMN05444405_111104	SAMN05444405_111102	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	LSU ribosomal protein L10P.	0.997
rplK	rplA	SAMN05444405_111104	SAMN05444405_111103	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.999
rplK	rplL	SAMN05444405_111104	SAMN05444405_111101	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.998
rplK	rplM	SAMN05444405_111104	SAMN05444405_11742	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.992
rplK	rpsI	SAMN05444405_111104	SAMN05444405_11741	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.991
rplK	rpsP	SAMN05444405_111104	SAMN05444405_1135	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.986
rplL	SHF63569.1	SAMN05444405_111101	SAMN05444405_111102	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L10P.	0.996
rplL	rplA	SAMN05444405_111101	SAMN05444405_111103	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.997