(10 nodes) Y_Y_Y domain network (Bacteroides luti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SHE68147.1	Signal transduction histidine kinase. (1348 aa)
	SHE96331.1	Monosaccharide ABC transporter substrate-binding protein, CUT2 family. (941 aa)
	SHF32655.1	Two component regulator propeller. (1312 aa)
	SHF33072.1	Signal transduction histidine kinase. (1361 aa)
	SHF41788.1	Signal transduction histidine kinase. (873 aa)
	SHF50653.1	Signal transduction histidine kinase. (1440 aa)
	SHF70989.1	Signal transduction histidine kinase. (1289 aa)
	SHF73712.1	Signal transduction histidine kinase. (1374 aa)
	SHF88678.1	Two component regulator propeller. (1320 aa)
	SHG01533.1	Signal transduction histidine kinase. (1433 aa)

Your Current Organism:

Bacteroides luti

NCBI taxonomy Id: 1297750
Other names: B. luti, Bacteroides luti Hatamoto et al. 2014, Bacteroides sp. UasXn-3, DSM 26991, JCM 19020, strain UasXn-3

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHE68147.1	SHE96331.1	SAMN05444405_102292	SAMN05444405_104114	Signal transduction histidine kinase.	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	0.998
SHE68147.1	SHF32655.1	SAMN05444405_102292	SAMN05444405_10769	Signal transduction histidine kinase.	Two component regulator propeller.	0.974
SHE68147.1	SHF33072.1	SAMN05444405_102292	SAMN05444405_10780	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.972
SHE68147.1	SHF41788.1	SAMN05444405_102292	SAMN05444405_108112	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.981
SHE68147.1	SHF50653.1	SAMN05444405_102292	SAMN05444405_109136	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.974
SHE68147.1	SHF70989.1	SAMN05444405_102292	SAMN05444405_11290	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.974
SHE68147.1	SHF73712.1	SAMN05444405_102292	SAMN05444405_1134	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.973
SHE68147.1	SHF88678.1	SAMN05444405_102292	SAMN05444405_11631	Signal transduction histidine kinase.	Two component regulator propeller.	0.974
SHE68147.1	SHG01533.1	SAMN05444405_102292	SAMN05444405_12024	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.976
SHE96331.1	SHE68147.1	SAMN05444405_104114	SAMN05444405_102292	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Signal transduction histidine kinase.	0.998
SHE96331.1	SHF32655.1	SAMN05444405_104114	SAMN05444405_10769	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Two component regulator propeller.	0.998
SHE96331.1	SHF33072.1	SAMN05444405_104114	SAMN05444405_10780	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Signal transduction histidine kinase.	0.998
SHE96331.1	SHF41788.1	SAMN05444405_104114	SAMN05444405_108112	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Signal transduction histidine kinase.	0.998
SHE96331.1	SHF50653.1	SAMN05444405_104114	SAMN05444405_109136	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Signal transduction histidine kinase.	0.998
SHE96331.1	SHF70989.1	SAMN05444405_104114	SAMN05444405_11290	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Signal transduction histidine kinase.	0.998
SHE96331.1	SHF73712.1	SAMN05444405_104114	SAMN05444405_1134	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Signal transduction histidine kinase.	0.998
SHE96331.1	SHF88678.1	SAMN05444405_104114	SAMN05444405_11631	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Two component regulator propeller.	0.998
SHE96331.1	SHG01533.1	SAMN05444405_104114	SAMN05444405_12024	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Signal transduction histidine kinase.	0.997
SHF32655.1	SHE68147.1	SAMN05444405_10769	SAMN05444405_102292	Two component regulator propeller.	Signal transduction histidine kinase.	0.974
SHF32655.1	SHE96331.1	SAMN05444405_10769	SAMN05444405_104114	Two component regulator propeller.	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	0.998