(32 nodes) Electron transport chain, and Heme O metabolic process network (Gracilibacillus boraciitolerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GAE91173.1	Cytochrome c551. (120 aa)
	GAE93402.1	Hypothetical protein. (88 aa)
	GAE93403.1	Heme O synthase. (44 aa)
	GAE93404.1	Heme O synthase. (153 aa)
	GAE91378.1	Menaquinone-cytochrome C reductase iron-sulfur subunit. (174 aa)
	GAE91379.1	Menaquinone-cytochrome c reductase. (224 aa)
	GAE91380.1	Menaquinone-cytochrome C oxidoreductase. (263 aa)
	GAE94249.1	Cytochrome c oxidase polypeptide II. (193 aa)
	GAE94250.1	Cytochrome O ubiquinol oxidase subunit I. (154 aa)
	GAE94251.1	Cytochrome c oxidase polypeptide I. (195 aa)
	GAE94252.1	Cytochrome c oxidase polypeptide I. (166 aa)
	GAE94253.1	AA3-600 quinol oxidase subunit IIII. (330 aa)
	GAE94627.1	AA3-600 quinol oxidase subunit II; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Subunit II transfers the electrons from a quinol to the binuclear center of the catalytic subunit I. (330 aa)
	GAE94628.1	AA3-600 quinol oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (524 aa)
	GAE94629.1	AA3-600 quinol oxidase subunit I. (81 aa)
	GAE94630.1	AA3-600 quinol oxidase subunit IIII. (199 aa)
	GAE94631.1	AA3-600 quinol oxidase subunit IV. (100 aa)
	GAE91434.1	Rieske protein. (401 aa)
	GAE94844.1	Hypothetical protein. (257 aa)
	GAE94850.1	Hypothetical protein. (89 aa)
	GAE95015.1	Hypothetical protein. (123 aa)
	GAE91550.1	Hypothetical protein. (57 aa)
	GAE91551.1	Peptidase. (370 aa)
	GAE91552.1	Zinc protease. (189 aa)
	GAE91553.1	Zinc protease. (236 aa)
	GAE91771.1	Cytochrome c oxidase. (107 aa)
	GAE91772.1	Cytochrome c oxidase polypeptide III. (207 aa)
	GAE91773.1	Cytochrome c oxidase polypeptide I. (179 aa)
	GAE91774.1	Cytochrome c oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family. (343 aa)
	GAE91775.1	Cytochrome c oxidase polypeptide II. (147 aa)
	GAE91776.1	Cytochrome c oxidase polypeptide II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (225 aa)
	GAE91778.1	Heme O synthase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (222 aa)

Your Current Organism:

Gracilibacillus boraciitolerans

NCBI taxonomy Id: 1298598
Other names: G. boraciitolerans JCM 21714, Gracilibacillus boraciitolerans JCM 21714

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAE91173.1	GAE91378.1	JCM21714_114	JCM21714_326	Cytochrome c551.	Menaquinone-cytochrome C reductase iron-sulfur subunit.	0.998
GAE91173.1	GAE91379.1	JCM21714_114	JCM21714_327	Cytochrome c551.	Menaquinone-cytochrome c reductase.	0.992
GAE91173.1	GAE91380.1	JCM21714_114	JCM21714_328	Cytochrome c551.	Menaquinone-cytochrome C oxidoreductase.	0.994
GAE91173.1	GAE91434.1	JCM21714_114	JCM21714_383	Cytochrome c551.	Rieske protein.	0.995
GAE91173.1	GAE91771.1	JCM21714_114	JCM21714_727	Cytochrome c551.	Cytochrome c oxidase.	0.923
GAE91173.1	GAE91772.1	JCM21714_114	JCM21714_728	Cytochrome c551.	Cytochrome c oxidase polypeptide III.	0.984
GAE91173.1	GAE91773.1	JCM21714_114	JCM21714_729	Cytochrome c551.	Cytochrome c oxidase polypeptide I.	0.937
GAE91173.1	GAE91774.1	JCM21714_114	JCM21714_730	Cytochrome c551.	Cytochrome c oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.	0.917
GAE91173.1	GAE91775.1	JCM21714_114	JCM21714_731	Cytochrome c551.	Cytochrome c oxidase polypeptide II.	0.999
GAE91173.1	GAE91776.1	JCM21714_114	JCM21714_732	Cytochrome c551.	Cytochrome c oxidase polypeptide II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.999
GAE91173.1	GAE91778.1	JCM21714_114	JCM21714_734	Cytochrome c551.	Heme O synthase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.594
GAE91173.1	GAE93402.1	JCM21714_114	JCM21714_2482	Cytochrome c551.	Hypothetical protein.	0.594
GAE91173.1	GAE93403.1	JCM21714_114	JCM21714_2483	Cytochrome c551.	Heme O synthase.	0.594
GAE91173.1	GAE93404.1	JCM21714_114	JCM21714_2484	Cytochrome c551.	Heme O synthase.	0.594
GAE91173.1	GAE94249.1	JCM21714_114	JCM21714_3389	Cytochrome c551.	Cytochrome c oxidase polypeptide II.	0.999
GAE91173.1	GAE94250.1	JCM21714_114	JCM21714_3390	Cytochrome c551.	Cytochrome O ubiquinol oxidase subunit I.	0.917
GAE91173.1	GAE94251.1	JCM21714_114	JCM21714_3391	Cytochrome c551.	Cytochrome c oxidase polypeptide I.	0.917
GAE91173.1	GAE94252.1	JCM21714_114	JCM21714_3392	Cytochrome c551.	Cytochrome c oxidase polypeptide I.	0.917
GAE91173.1	GAE94253.1	JCM21714_114	JCM21714_3393	Cytochrome c551.	AA3-600 quinol oxidase subunit IIII.	0.981
GAE91173.1	GAE94627.1	JCM21714_114	JCM21714_3803	Cytochrome c551.	AA3-600 quinol oxidase subunit II; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Subunit II transfers the electrons from a quinol to the binuclear center of the catalytic subunit I.	0.929