(13 nodes) Proteasome core complex network (Wallemia ichthyophaga)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	J056_002785	Proteasome subunit alpha type. (257 aa)
	J056_002373	Proteasome subunit beta; Belongs to the peptidase T1B family. (276 aa)
	J056_002503	Proteasome subunit alpha type. (269 aa)
	J056_001551	Proteasome subunit alpha type. (245 aa)
	J056_000772	Proteasome subunit beta. (245 aa)
	J056_004570	Proteasome subunit beta type-7. (508 aa)
	J056_004516	Proteasome subunit alpha type. (250 aa)
	J056_004629	Proteasome subunit alpha type. (271 aa)
	J056_003925	Proteasome subunit beta. (205 aa)
	J056_004487	Proteasome subunit alpha type. (259 aa)
	J056_003131	Proteasome subunit beta. (255 aa)
	J056_000081	Proteasome subunit beta. (287 aa)
	J056_000256	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (256 aa)

Your Current Organism:

Wallemia ichthyophaga

NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J056_000081	J056_000256	R9ARC8	R9AXS3	Proteasome subunit beta.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.998
J056_000081	J056_000772	R9ARC8	R9AEE5	Proteasome subunit beta.	Proteasome subunit beta.	0.999
J056_000081	J056_001551	R9ARC8	R9AC91	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
J056_000081	J056_002373	R9ARC8	R9AAL1	Proteasome subunit beta.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
J056_000081	J056_002503	R9ARC8	R9AAM6	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
J056_000081	J056_002785	R9ARC8	R9A9P8	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
J056_000081	J056_003131	R9ARC8	R9AN83	Proteasome subunit beta.	Proteasome subunit beta.	0.998
J056_000081	J056_003925	R9ARC8	R9AHK2	Proteasome subunit beta.	Proteasome subunit beta.	0.999
J056_000081	J056_004487	R9ARC8	R9AM36	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
J056_000081	J056_004516	R9ARC8	R9AGD0	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
J056_000081	J056_004570	R9ARC8	R9AGB1	Proteasome subunit beta.	Proteasome subunit beta type-7.	0.999
J056_000081	J056_004629	R9ARC8	R9AGJ1	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
J056_000256	J056_000081	R9AXS3	R9ARC8	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit beta.	0.998
J056_000256	J056_000772	R9AXS3	R9AEE5	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit beta.	0.999
J056_000256	J056_001551	R9AXS3	R9AC91	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit alpha type.	0.999
J056_000256	J056_002373	R9AXS3	R9AAL1	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
J056_000256	J056_002503	R9AXS3	R9AAM6	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit alpha type.	0.999
J056_000256	J056_002785	R9AXS3	R9A9P8	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit alpha type.	0.999
J056_000256	J056_003131	R9AXS3	R9AN83	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit beta.	0.999
J056_000256	J056_003925	R9AXS3	R9AHK2	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Proteasome subunit beta.	0.999