STRINGSTRING
SEP66587.1 SEP66587.1 SEQ03816.1 SEQ03816.1 SEP96648.1 SEP96648.1 SEP95102.1 SEP95102.1 SEP99042.1 SEP99042.1 menG menG thyA thyA SEP98346.1 SEP98346.1 SEP98261.1 SEP98261.1 SEP98192.1 SEP98192.1 SEP98164.1 SEP98164.1 SEP89629.1 SEP89629.1 SEP83718.1 SEP83718.1 SEP80355.1 SEP80355.1 rsmH rsmH SEP77782.1 SEP77782.1 rlmN rlmN SEP77349.1 SEP77349.1 SEP77161.1 SEP77161.1 rsmG rsmG SEP76232.1 SEP76232.1 SEP66408.1 SEP66408.1 SEP65718.1 SEP65718.1 SEP64609.1 SEP64609.1 SEP54867.1 SEP54867.1 trmD trmD SEP61064.1 SEP61064.1 pcm pcm SEP59837.1 SEP59837.1 SEP59626.1 SEP59626.1 SEP59552.1 SEP59552.1 SEP58742.1 SEP58742.1 SEP58615.1 SEP58615.1 SEP54762.1 SEP54762.1 SEP57393.1 SEP57393.1 SEP56721.1 SEP56721.1 rlmH rlmH prmC prmC SEP54970.1 SEP54970.1 SEQ22019.1 SEQ22019.1 SEQ21963.1 SEQ21963.1 SEQ16202.1 SEQ16202.1 trmH trmH rsmA rsmA SEQ12556.1 SEQ12556.1 SEQ12532.1 SEQ12532.1 SEQ12515.1 SEQ12515.1 rsmI rsmI SEQ16871.1 SEQ16871.1 trmB trmB SEQ12342.1 SEQ12342.1 SEQ12318.1 SEQ12318.1 SEQ09523.1 SEQ09523.1 SEQ07917.1 SEQ07917.1 SEQ08551.1 SEQ08551.1 SEQ08529.1 SEQ08529.1 rlmF rlmF SEQ05029.1 SEQ05029.1 SEQ04760.1 SEQ04760.1 SEQ04480.1 SEQ04480.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SEP66587.1Hypothetical protein. (707 aa)
SEQ03816.1Type I restriction enzyme M protein. (779 aa)
SEP96648.123S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (245 aa)
SEP95102.1Hypothetical protein. (165 aa)
SEP99042.1RNA methyltransferase, TrmH family. (240 aa)
menGDemethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). (243 aa)
thyAThymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. (274 aa)
SEP98346.1uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase/uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (272 aa)
SEP98261.1Hypothetical protein. (482 aa)
SEP98192.15-methyltetrahydrofolate--homocysteine methyltransferase. (331 aa)
SEP98164.1Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (891 aa)
SEP89629.123S rRNA (cytosine1962-C5)-methyltransferase. (387 aa)
SEP83718.1Predicted O-methyltransferase YrrM. (273 aa)
SEP80355.1Hypothetical protein. (656 aa)
rsmH16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (298 aa)
SEP77782.1Predicted O-methyltransferase YrrM. (213 aa)
rlmN23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (346 aa)
SEP77349.1Methyltransferase domain-containing protein. (256 aa)
SEP77161.1SpoU rRNA Methylase family protein. (175 aa)
rsmG16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (209 aa)
SEP76232.1Protein of unknown function. (188 aa)
SEP66408.1Hypothetical protein. (420 aa)
SEP65718.1[LSU ribosomal protein L11P]-lysine N-methyltransferase. (288 aa)
SEP64609.116S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (405 aa)
SEP54867.1Methyltransferase domain-containing protein. (245 aa)
trmDtRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (225 aa)
SEP61064.116S rRNA (guanine(966)-N(2))-methyltransferase RsmD. (206 aa)
pcmprotein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. (213 aa)
SEP59837.1Methyltransferase domain-containing protein. (278 aa)
SEP59626.116S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (234 aa)
SEP59552.1Conserved hypothetical protein 95. (391 aa)
SEP58742.1Hypothetical protein. (129 aa)
SEP58615.1Methyltransferase domain-containing protein. (269 aa)
SEP54762.1Methyltransferase, FkbM family. (245 aa)
SEP57393.1RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (262 aa)
SEP56721.1Thiopurine S-methyltransferase (TPMT). (194 aa)
rlmH23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (157 aa)
prmCRelease factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. (288 aa)
SEP54970.116S rRNA (cytidine1402-2'-O)-methyltransferase. (245 aa)
SEQ22019.1Putative N6-adenine-specific DNA methylase; Belongs to the methyltransferase superfamily. (383 aa)
SEQ21963.123S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (470 aa)
SEQ16202.1methylated-DNA-[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (157 aa)
trmHtRNA (guanosine-2'-O-)-methyltransferase; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (218 aa)
rsmADimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (258 aa)
SEQ12556.1Radical SAM superfamily enzyme YgiQ, UPF0313 family. (479 aa)
SEQ12532.1Methyltransferase domain-containing protein. (256 aa)
SEQ12515.1Radical SAM superfamily enzyme YgiQ, UPF0313 family. (458 aa)
rsmI16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (225 aa)
SEQ16871.1tRNA1Val (adenine37-N6)-methyltransferase; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (219 aa)
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (224 aa)
SEQ12342.1Radical SAM superfamily enzyme YgiQ, UPF0313 family. (481 aa)
SEQ12318.1Release factor glutamine methyltransferase; Belongs to the methyltransferase superfamily. (219 aa)
SEQ09523.1Radical SAM superfamily enzyme YgiQ, UPF0313 family. (725 aa)
SEQ07917.1tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC. (222 aa)
SEQ08551.1Site-specific DNA-methyltransferase (adenine-specific)/modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. (265 aa)
SEQ08529.1Site-specific DNA-methyltransferase (adenine-specific); Belongs to the N(4)/N(6)-methyltransferase family. (268 aa)
rlmF23S rRNA m(6)A-1618 methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. (304 aa)
SEQ05029.1Hypothetical protein. (534 aa)
SEQ04760.1SpoU rRNA Methylase family protein. (152 aa)
SEQ04480.1Adenine-specific DNA-methyltransferase. (584 aa)
Your Current Organism:
Flavobacterium urocaniciphilum
NCBI taxonomy Id: 1299341
Other names: DSM 27078, F. urocaniciphilum, Flavobacterium sp. YIT 12746, Flavobacterium urocaniciphilum Fujii et al. 2014, JCM 19142, YIT 12746
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