(16 nodes) Mixed, incl. Zinc-binding ribosomal protein, and Cytosolic small ribosomal subunit network (Galdieria sulphuraria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gasu_53510	40S ribosomal protein S27. (85 aa)
	Gasu_49690	60S ribosomal protein L44e; Belongs to the eukaryotic ribosomal protein eL42 family. (104 aa)
	Gasu_29040	60S ribosomal protein L21e. (160 aa)
	Gasu_01330	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family. (147 aa)
	Gasu_50890	Ribosomal protein L37; Binds to the 23S rRNA. (96 aa)
	Gasu_37110	60S ribosomal protein L12e; Belongs to the universal ribosomal protein uL11 family. (174 aa)
	Gasu_37250	60S ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	Gasu_26720	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (110 aa)
	Gasu_10140	Ubiquitin. (128 aa)
	Gasu_04730	60S ribosomal protein L30e. (111 aa)
	Gasu_54530	40S ribosomal protein S1e. (143 aa)
	Gasu_18810	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	Gasu_06000	40S ribosomal protein S17. (133 aa)
	Gasu_53580	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	Gasu_20930	40S ribosomal protein S19e. (148 aa)
	Gasu_13470	40S ribosomal protein S14e; Belongs to the universal ribosomal protein uS11 family. (150 aa)

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_01330	Gasu_04730	M2WA44	M2X7B2	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L30e.	0.999
Gasu_01330	Gasu_06000	M2WA44	M2XPP6	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S17.	0.999
Gasu_01330	Gasu_10140	M2WA44	M2X634	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	Ubiquitin.	0.999
Gasu_01330	Gasu_13470	M2WA44	M2Y5Y5	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S14e; Belongs to the universal ribosomal protein uS11 family.	0.999
Gasu_01330	Gasu_18810	M2WA44	M2XL52	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
Gasu_01330	Gasu_20930	M2WA44	M2Y476	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S19e.	0.999
Gasu_01330	Gasu_26720	M2WA44	M2X0L9	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
Gasu_01330	Gasu_29040	M2WA44	M2W1X3	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L21e.	0.999
Gasu_01330	Gasu_37110	M2WA44	M2WXN9	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L12e; Belongs to the universal ribosomal protein uL11 family.	0.999
Gasu_01330	Gasu_37250	M2WA44	M2WXQ7	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
Gasu_01330	Gasu_49690	M2WA44	M2VWA2	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L44e; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
Gasu_01330	Gasu_50890	M2WA44	M2WTY6	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
Gasu_01330	Gasu_53510	M2WA44	M2VUX8	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S27.	0.999
Gasu_01330	Gasu_53580	M2WA44	M2XTM9	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
Gasu_01330	Gasu_54530	M2WA44	M2XAT5	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	40S ribosomal protein S1e.	0.999
Gasu_04730	Gasu_01330	M2X7B2	M2WA44	60S ribosomal protein L30e.	60S ribosomal protein L27Ae; Belongs to the universal ribosomal protein uL15 family.	0.999
Gasu_04730	Gasu_06000	M2X7B2	M2XPP6	60S ribosomal protein L30e.	40S ribosomal protein S17.	0.999
Gasu_04730	Gasu_10140	M2X7B2	M2X634	60S ribosomal protein L30e.	Ubiquitin.	0.999
Gasu_04730	Gasu_13470	M2X7B2	M2Y5Y5	60S ribosomal protein L30e.	40S ribosomal protein S14e; Belongs to the universal ribosomal protein uS11 family.	0.999
Gasu_04730	Gasu_18810	M2X7B2	M2XL52	60S ribosomal protein L30e.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999