(13 nodes) Proteasome regulatory particle, and 26S proteasome subunit RPN7 network (Galdieria sulphuraria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gasu_17990	26S proteasome regulatory subunit N7. (384 aa)
	Gasu_16150	26S proteasome regulatory subunit N3. (508 aa)
	Gasu_47410	AAA-type ATPase; Belongs to the AAA ATPase family. (421 aa)
	Gasu_05640	26S proteasome regulatory subunit N9. (383 aa)
	Gasu_55750	26S proteasome regulatory subunit N1. (341 aa)
	Gasu_39320	AAA-type ATPase; Belongs to the AAA ATPase family. (407 aa)
	Gasu_37940	AAA-type ATPase; Belongs to the AAA ATPase family. (413 aa)
	Gasu_37490	AAA-type ATPase; Belongs to the AAA ATPase family. (406 aa)
	Gasu_28000	26S proteasome regulatory subunit N2; Belongs to the proteasome subunit S1 family. (1000 aa)
	Gasu_26390	26S proteasome regulatory subunit N11. (309 aa)
	Gasu_21910	AAA-type ATPase; Belongs to the AAA ATPase family. (426 aa)
	Gasu_13820	26S proteasome regulatory subunit N1 isoform 1. (941 aa)
	Gasu_04270	26S proteasome regulatory subunit N8. (324 aa)

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_04270	Gasu_05640	M2Y8F5	M2X6K6	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N9.	0.999
Gasu_04270	Gasu_13820	M2Y8F5	M2Y6E5	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N1 isoform 1.	0.999
Gasu_04270	Gasu_16150	M2Y8F5	M2W5Q6	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N3.	0.999
Gasu_04270	Gasu_17990	M2Y8F5	M2W5I0	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N7.	0.999
Gasu_04270	Gasu_21910	M2Y8F5	M2Y3X0	26S proteasome regulatory subunit N8.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999
Gasu_04270	Gasu_26390	M2Y8F5	M2Y2L0	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N11.	0.999
Gasu_04270	Gasu_28000	M2Y8F5	M2Y1J8	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N2; Belongs to the proteasome subunit S1 family.	0.999
Gasu_04270	Gasu_37490	M2Y8F5	M2XZ78	26S proteasome regulatory subunit N8.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999
Gasu_04270	Gasu_37940	M2Y8F5	M2XYW2	26S proteasome regulatory subunit N8.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999
Gasu_04270	Gasu_39320	M2Y8F5	M2XYK5	26S proteasome regulatory subunit N8.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999
Gasu_04270	Gasu_47410	M2Y8F5	M2WUW2	26S proteasome regulatory subunit N8.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999
Gasu_04270	Gasu_55750	M2Y8F5	M2XSZ8	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N1.	0.999
Gasu_05640	Gasu_04270	M2X6K6	M2Y8F5	26S proteasome regulatory subunit N9.	26S proteasome regulatory subunit N8.	0.999
Gasu_05640	Gasu_13820	M2X6K6	M2Y6E5	26S proteasome regulatory subunit N9.	26S proteasome regulatory subunit N1 isoform 1.	0.999
Gasu_05640	Gasu_16150	M2X6K6	M2W5Q6	26S proteasome regulatory subunit N9.	26S proteasome regulatory subunit N3.	0.999
Gasu_05640	Gasu_17990	M2X6K6	M2W5I0	26S proteasome regulatory subunit N9.	26S proteasome regulatory subunit N7.	0.999
Gasu_05640	Gasu_21910	M2X6K6	M2Y3X0	26S proteasome regulatory subunit N9.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999
Gasu_05640	Gasu_26390	M2X6K6	M2Y2L0	26S proteasome regulatory subunit N9.	26S proteasome regulatory subunit N11.	0.999
Gasu_05640	Gasu_28000	M2X6K6	M2Y1J8	26S proteasome regulatory subunit N9.	26S proteasome regulatory subunit N2; Belongs to the proteasome subunit S1 family.	0.999
Gasu_05640	Gasu_37490	M2X6K6	M2XZ78	26S proteasome regulatory subunit N9.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999