(12 nodes) Golgi-associated vesicle membrane network (Galdieria sulphuraria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gasu_26520	Protein transport protein Sec24-like protein isoform 1. (1119 aa)
	Gasu_00480	Protein transport protein Sec24-like protein. (1072 aa)
	Gasu_15420	ER lumen protein-retaining receptor. (219 aa)
	Gasu_17820	Uncharacterized protein. (539 aa)
	Gasu_53820	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (111 aa)
	Gasu_33260	Uncharacterized protein. (555 aa)
	Gasu_55600	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (897 aa)
	Gasu_07280	WD_REPEATS_REGION domain-containing protein. (1483 aa)
	Gasu_26230	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (768 aa)
	Gasu_64060	Uncharacterized protein. (543 aa)
	Gasu_19570	ADP-ribosylation factor isoform 1; Belongs to the small GTPase superfamily. SAR1 family. (188 aa)
	Gasu_41890	AP-1 complex subunit gamma. (843 aa)

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_00480	Gasu_07280	M2XQZ9	M2W809	Protein transport protein Sec24-like protein.	WD_REPEATS_REGION domain-containing protein.	0.998
Gasu_00480	Gasu_19570	M2XQZ9	M2Y4E9	Protein transport protein Sec24-like protein.	ADP-ribosylation factor isoform 1; Belongs to the small GTPase superfamily. SAR1 family.	0.980
Gasu_00480	Gasu_26230	M2XQZ9	M2W2W3	Protein transport protein Sec24-like protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.999
Gasu_00480	Gasu_26520	M2XQZ9	M2Y272	Protein transport protein Sec24-like protein.	Protein transport protein Sec24-like protein isoform 1.	0.998
Gasu_00480	Gasu_55600	M2XQZ9	M2WSP4	Protein transport protein Sec24-like protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.533
Gasu_07280	Gasu_00480	M2W809	M2XQZ9	WD_REPEATS_REGION domain-containing protein.	Protein transport protein Sec24-like protein.	0.998
Gasu_07280	Gasu_15420	M2W809	M2XM93	WD_REPEATS_REGION domain-containing protein.	ER lumen protein-retaining receptor.	0.407
Gasu_07280	Gasu_19570	M2W809	M2Y4E9	WD_REPEATS_REGION domain-containing protein.	ADP-ribosylation factor isoform 1; Belongs to the small GTPase superfamily. SAR1 family.	0.997
Gasu_07280	Gasu_26230	M2W809	M2W2W3	WD_REPEATS_REGION domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.999
Gasu_07280	Gasu_26520	M2W809	M2Y272	WD_REPEATS_REGION domain-containing protein.	Protein transport protein Sec24-like protein isoform 1.	0.994
Gasu_07280	Gasu_55600	M2W809	M2WSP4	WD_REPEATS_REGION domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.637
Gasu_15420	Gasu_07280	M2XM93	M2W809	ER lumen protein-retaining receptor.	WD_REPEATS_REGION domain-containing protein.	0.407
Gasu_15420	Gasu_26230	M2XM93	M2W2W3	ER lumen protein-retaining receptor.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.483
Gasu_15420	Gasu_55600	M2XM93	M2WSP4	ER lumen protein-retaining receptor.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.895
Gasu_19570	Gasu_00480	M2Y4E9	M2XQZ9	ADP-ribosylation factor isoform 1; Belongs to the small GTPase superfamily. SAR1 family.	Protein transport protein Sec24-like protein.	0.980
Gasu_19570	Gasu_07280	M2Y4E9	M2W809	ADP-ribosylation factor isoform 1; Belongs to the small GTPase superfamily. SAR1 family.	WD_REPEATS_REGION domain-containing protein.	0.997
Gasu_19570	Gasu_26230	M2Y4E9	M2W2W3	ADP-ribosylation factor isoform 1; Belongs to the small GTPase superfamily. SAR1 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.996
Gasu_19570	Gasu_26520	M2Y4E9	M2Y272	ADP-ribosylation factor isoform 1; Belongs to the small GTPase superfamily. SAR1 family.	Protein transport protein Sec24-like protein isoform 1.	0.915
Gasu_26230	Gasu_00480	M2W2W3	M2XQZ9	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Protein transport protein Sec24-like protein.	0.999
Gasu_26230	Gasu_07280	M2W2W3	M2W809	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD_REPEATS_REGION domain-containing protein.	0.999