36 items (Galdieria sulphuraria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gasu_30300	Proteasome subunit beta; Belongs to the peptidase T1B family. (234 aa)
	Gasu_21750	Proteasome subunit alpha type. (252 aa)
	Gasu_37470	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (275 aa)
	Gasu_04270	26S proteasome regulatory subunit N8. (324 aa)
	Gasu_13820	26S proteasome regulatory subunit N1 isoform 1. (941 aa)
	Gasu_13620	Heat shock protein; Belongs to the small heat shock protein (HSP20) family. (198 aa)
	Gasu_51250	26S proteasome regulatory subunit N5. (455 aa)
	Gasu_05640	26S proteasome regulatory subunit N9. (383 aa)
	Gasu_11110	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (193 aa)
	Gasu_27920	Proteasome subunit alpha type. (235 aa)
	Gasu_27820	Proteasome subunit alpha type. (250 aa)
	Gasu_47410	AAA-type ATPase; Belongs to the AAA ATPase family. (421 aa)
	Gasu_59700	Proteasome activator subunit 4. (1793 aa)
	Gasu_55750	26S proteasome regulatory subunit N1. (341 aa)
	Gasu_39320	AAA-type ATPase; Belongs to the AAA ATPase family. (407 aa)
	Gasu_37940	AAA-type ATPase; Belongs to the AAA ATPase family. (413 aa)
	Gasu_37490	AAA-type ATPase; Belongs to the AAA ATPase family. (406 aa)
	Gasu_28000	26S proteasome regulatory subunit N2; Belongs to the proteasome subunit S1 family. (1000 aa)
	Gasu_21900	Uncharacterized protein. (337 aa)
	Gasu_21910	AAA-type ATPase; Belongs to the AAA ATPase family. (426 aa)
	Gasu_20880	Proteasome subunit alpha type. (264 aa)
	Gasu_17930	26S proteasome regulatory subunit N6. (423 aa)
	Gasu_15880	Proteasome subunit alpha type. (252 aa)
	Gasu_54410	Proteasome subunit alpha type. (247 aa)
	Gasu_59880	Heat shock protein; Belongs to the small heat shock protein (HSP20) family. (157 aa)
	Gasu_60610	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (227 aa)
	Gasu_07240	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (206 aa)
	Gasu_09730	Uncharacterized protein. (498 aa)
	Gasu_15250	Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family. (179 aa)
	Gasu_17990	26S proteasome regulatory subunit N7. (384 aa)
	Gasu_19040	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (275 aa)
	Gasu_23300	AAA-type ATPase; Belongs to the AAA ATPase family. (413 aa)
	Gasu_16900	Proteasome subunit alpha type. (294 aa)
	Gasu_30250	26S proteasome non-ATPase regulatory subunit 9. (237 aa)
	Gasu_32320	26S proteasome regulatory subunit N12. (271 aa)
	Gasu_55610	Translocation protein, Sec family; Belongs to the SecY/SEC61-alpha family. (474 aa)

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_04270	Gasu_05640	M2Y8F5	M2X6K6	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N9.	0.999
Gasu_04270	Gasu_07240	M2Y8F5	M2W804	26S proteasome regulatory subunit N8.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.998
Gasu_04270	Gasu_09730	M2Y8F5	M2W7V5	26S proteasome regulatory subunit N8.	Uncharacterized protein.	0.992
Gasu_04270	Gasu_11110	M2Y8F5	M2X5G7	26S proteasome regulatory subunit N8.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.999
Gasu_04270	Gasu_13820	M2Y8F5	M2Y6E5	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N1 isoform 1.	0.999
Gasu_04270	Gasu_15880	M2Y8F5	M2Y5E9	26S proteasome regulatory subunit N8.	Proteasome subunit alpha type.	0.999
Gasu_04270	Gasu_16900	M2Y8F5	M2XL93	26S proteasome regulatory subunit N8.	Proteasome subunit alpha type.	0.998
Gasu_04270	Gasu_17930	M2Y8F5	M2Y5A0	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N6.	0.999
Gasu_04270	Gasu_17990	M2Y8F5	M2W5I0	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N7.	0.999
Gasu_04270	Gasu_19040	M2Y8F5	M2W568	26S proteasome regulatory subunit N8.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.988
Gasu_04270	Gasu_20880	M2Y8F5	M2Y471	26S proteasome regulatory subunit N8.	Proteasome subunit alpha type.	0.998
Gasu_04270	Gasu_21750	M2Y8F5	M2XK43	26S proteasome regulatory subunit N8.	Proteasome subunit alpha type.	0.999
Gasu_04270	Gasu_21910	M2Y8F5	M2Y3X0	26S proteasome regulatory subunit N8.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999
Gasu_04270	Gasu_23300	M2Y8F5	M2W3W8	26S proteasome regulatory subunit N8.	AAA-type ATPase; Belongs to the AAA ATPase family.	0.999
Gasu_04270	Gasu_27820	M2Y8F5	M2X0C1	26S proteasome regulatory subunit N8.	Proteasome subunit alpha type.	0.999
Gasu_04270	Gasu_27920	M2Y8F5	M2X0D5	26S proteasome regulatory subunit N8.	Proteasome subunit alpha type.	0.999
Gasu_04270	Gasu_28000	M2Y8F5	M2Y1J8	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N2; Belongs to the proteasome subunit S1 family.	0.999
Gasu_04270	Gasu_30250	M2Y8F5	M2W1N5	26S proteasome regulatory subunit N8.	26S proteasome non-ATPase regulatory subunit 9.	0.800
Gasu_04270	Gasu_30300	M2Y8F5	M2W1N9	26S proteasome regulatory subunit N8.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
Gasu_04270	Gasu_32320	M2Y8F5	M2W194	26S proteasome regulatory subunit N8.	26S proteasome regulatory subunit N12.	0.999