9 items (Methanocaldococcus bathoardescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atpA	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. (563 aa)
	AIJ05464.1	Plasma-membrane proton-efflux P-type ATPase; COG0474. (800 aa)
	atpD	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane. (216 aa)
	AIJ06422.1	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family. (671 aa)
	AIJ06423.1	V-type ATP synthase subunit K; COG0636; Belongs to the V-ATPase proteolipid subunit family. (218 aa)
	atpE	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane. (203 aa)
	atpC	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane. (399 aa)
	atpF	V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane. (98 aa)
	atpB	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit. (420 aa)

Your Current Organism:

Methanocaldococcus bathoardescens

NCBI taxonomy Id: 1301915
Other names: DSM 27223, KACC 18232, M. bathoardescens, Methanocaldococcus bathoardescens Stewart et al. 2015, Methanocaldococcus sp. JH146, strain JH146

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIJ05464.1	AIJ06422.1	JH146_0615	JH146_1580	Plasma-membrane proton-efflux P-type ATPase; COG0474.	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	0.949
AIJ05464.1	AIJ06423.1	JH146_0615	JH146_1581	Plasma-membrane proton-efflux P-type ATPase; COG0474.	V-type ATP synthase subunit K; COG0636; Belongs to the V-ATPase proteolipid subunit family.	0.954
AIJ05464.1	atpA	JH146_0615	JH146_1585	Plasma-membrane proton-efflux P-type ATPase; COG0474.	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.934
AIJ05464.1	atpB	JH146_0615	JH146_1586	Plasma-membrane proton-efflux P-type ATPase; COG0474.	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.929
AIJ05464.1	atpC	JH146_0615	JH146_1583	Plasma-membrane proton-efflux P-type ATPase; COG0474.	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.925
AIJ05464.1	atpD	JH146_0615	JH146_0839	Plasma-membrane proton-efflux P-type ATPase; COG0474.	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.945
AIJ05464.1	atpE	JH146_0615	JH146_1582	Plasma-membrane proton-efflux P-type ATPase; COG0474.	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.925
AIJ05464.1	atpF	JH146_0615	JH146_1584	Plasma-membrane proton-efflux P-type ATPase; COG0474.	V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.922
AIJ06422.1	AIJ05464.1	JH146_1580	JH146_0615	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	Plasma-membrane proton-efflux P-type ATPase; COG0474.	0.949
AIJ06422.1	AIJ06423.1	JH146_1580	JH146_1581	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit K; COG0636; Belongs to the V-ATPase proteolipid subunit family.	0.999
AIJ06422.1	atpA	JH146_1580	JH146_1585	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
AIJ06422.1	atpB	JH146_1580	JH146_1586	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.999
AIJ06422.1	atpC	JH146_1580	JH146_1583	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AIJ06422.1	atpD	JH146_1580	JH146_0839	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AIJ06422.1	atpE	JH146_1580	JH146_1582	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AIJ06422.1	atpF	JH146_1580	JH146_1584	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AIJ06423.1	AIJ05464.1	JH146_1581	JH146_0615	V-type ATP synthase subunit K; COG0636; Belongs to the V-ATPase proteolipid subunit family.	Plasma-membrane proton-efflux P-type ATPase; COG0474.	0.954
AIJ06423.1	AIJ06422.1	JH146_1581	JH146_1580	V-type ATP synthase subunit K; COG0636; Belongs to the V-ATPase proteolipid subunit family.	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	0.999
AIJ06423.1	atpA	JH146_1581	JH146_1585	V-type ATP synthase subunit K; COG0636; Belongs to the V-ATPase proteolipid subunit family.	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
AIJ06423.1	atpB	JH146_1581	JH146_1586	V-type ATP synthase subunit K; COG0636; Belongs to the V-ATPase proteolipid subunit family.	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.999

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About