STRINGSTRING
rpl10e rpl10e rpl31e rpl31e rps6e rps6e rpl37e rpl37e rpl7ae rpl7ae rps28e rps28e rpl24e rpl24e rpl37ae rpl37ae rpl18a rpl18a rps10 rps10 rps7 rps7 AIJ05741.1 AIJ05741.1 rpl30e rpl30e rpl15e rpl15e rps2 rps2 rps3ae rps3ae rpl40e rpl40e rps19e rps19e rpl39e rpl39e rps8e rps8e rpl14e rpl14e rpl34e rpl34e rpl11 rpl11 rpl22 rpl22 rps3 rps3 rpl29 rpl29 rps17 rps17 rpl14 rpl14 rpl24 rpl24 rps4e rps4e AIJ06226.1 AIJ06226.1 rps14 rps14 rps8 rps8 rpl6 rpl6 rpl32e rpl32e rpl19e rpl19e rpl18 rpl18 rps5 rps5 rpl30 rpl30 rpl15 rpl15 rpl12 rpl12 rpl10 rpl10 rpl1 rpl1 rps27ae rps27ae rps24e rps24e rps15 rps15 rpl21e rpl21e rps27e rps27e rpl44e rpl44e rps17e rps17e rps9 rps9 rpl13 rpl13 rpl18e rpl18e rps11 rps11 rps4 rps4 AIJ06457.1 AIJ06457.1 rps19p rps19p rpl2 rpl2 rpl23 rpl23 rpl4 rpl4 rpl3 rpl3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl10e50S ribosomal protein L10e; COG0197; Belongs to the universal ribosomal protein uL16 family. (174 aa)
rpl31e50S ribosomal protein L31e; COG2097; Belongs to the ribosomal protein L31e family. (82 aa)
rps6e30S ribosomal protein S6e; COG2125; Belongs to the eukaryotic ribosomal protein eS6 family. (131 aa)
rpl37e50S ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (61 aa)
rpl7ae50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (117 aa)
rps28e30S ribosomal protein S28e; COG2053; Belongs to the eukaryotic ribosomal protein eS28 family. (75 aa)
rpl24e50S ribosomal protein L24e; Binds to the 23S rRNA. (70 aa)
rpl37ae50S ribosomal protein L37Ae; Binds to the 23S rRNA. (92 aa)
rpl18a50S ribosomal protein LX; COG2157. (75 aa)
rps1030S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (101 aa)
rps730S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (191 aa)
AIJ05741.130S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (100 aa)
rpl30e50S ribosomal protein L30e; COG1911; Belongs to the eukaryotic ribosomal protein eL30 family. (104 aa)
rpl15e50S ribosomal protein L15e; COG1632; Belongs to the eukaryotic ribosomal protein eL15 family. (194 aa)
rps230S ribosomal protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. (222 aa)
rps3ae30S ribosomal protein S3Ae; COG1890; Belongs to the eukaryotic ribosomal protein eS1 family. (225 aa)
rpl40e50S ribosomal protein L40e; COG1552; Belongs to the eukaryotic ribosomal protein eL40 family. (47 aa)
rps19e30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (148 aa)
rpl39e50S ribosomal protein L39e; COG2167; Belongs to the eukaryotic ribosomal protein eL39 family. (51 aa)
rps8e30S ribosomal protein S8e; COG2007. (129 aa)
rpl14e50S ribosomal protein L14e; COG2163; Belongs to the eukaryotic ribosomal protein eL14 family. (80 aa)
rpl34e50S ribosomal protein L34e; COG2174; Belongs to the eukaryotic ribosomal protein eL34 family. (90 aa)
rpl1150S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (161 aa)
rpl2250S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (153 aa)
rps330S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (208 aa)
rpl2950S ribosomal protein L29; COG0255; Belongs to the universal ribosomal protein uL29 family. (70 aa)
rps1730S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (117 aa)
rpl1450S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rpl2450S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. (119 aa)
rps4e30S ribosomal protein S4e; COG1471; Belongs to the eukaryotic ribosomal protein eS4 family. (244 aa)
AIJ06226.150S ribosomal protein L5; COG0094; Belongs to the universal ribosomal protein uL5 family. (151 aa)
rps1430S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. (53 aa)
rps830S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpl650S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (182 aa)
rpl32e50S ribosomal protein L32e; COG1717; Belongs to the eukaryotic ribosomal protein eL32 family. (141 aa)
rpl19e50S ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa)
rpl1850S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (195 aa)
rps530S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (217 aa)
rpl3050S ribosomal protein L30P; COG1841. (154 aa)
rpl1550S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (143 aa)
rpl1250S ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (102 aa)
rpl1050S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (338 aa)
rpl150S ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (219 aa)
rps27ae30S ribosomal protein S27ae; COG1998; Belongs to the eukaryotic ribosomal protein eS31 family. (60 aa)
rps24e30S ribosomal protein S24e; COG2004; Belongs to the eukaryotic ribosomal protein eS24 family. (102 aa)
rps1530S ribosomal protein S15; COG0184. (153 aa)
rpl21e50S ribosomal protein L21e; COG2139; Belongs to the eukaryotic ribosomal protein eL21 family. (98 aa)
rps27e30S ribosomal protein S27e; COG2051. (61 aa)
rpl44e50S ribosomal protein L44e; Binds to the 23S rRNA. (94 aa)
rps17e30S ribosomal protein S17e; COG1383; Belongs to the eukaryotic ribosomal protein eS17 family. (62 aa)
rps930S ribosomal protein S9; COG0103; Belongs to the universal ribosomal protein uS9 family. (136 aa)
rpl1350S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (137 aa)
rpl18e50S ribosomal protein L18e; COG1727; Belongs to the eukaryotic ribosomal protein eL18 family. (120 aa)
rps1130S ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (129 aa)
rps430S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (187 aa)
AIJ06457.130S ribosomal protein S13; COG0099; Belongs to the universal ribosomal protein uS13 family. (114 aa)
rps19p30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (152 aa)
rpl250S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (241 aa)
rpl2350S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (86 aa)
rpl450S ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (252 aa)
rpl350S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (335 aa)
Your Current Organism:
Methanocaldococcus bathoardescens
NCBI taxonomy Id: 1301915
Other names: DSM 27223, KACC 18232, M. bathoardescens, Methanocaldococcus bathoardescens Stewart et al. 2015, Methanocaldococcus sp. JH146, strain JH146
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.