(4 nodes) PAS fold-4 network (Planococcus versutus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANU27799.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	ANU25850.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	ANU27377.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)
	ANU27667.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (529 aa)

Your Current Organism:

Planococcus versutus

NCBI taxonomy Id: 1302659
Other names: DSM 101994, KACC 18918, P. versutus, Planococcus sp. L10.15, Planococcus versutus See-Too et al. 2017, strain L10.15

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANU25850.1	ANU27377.1	I858_002120	I858_010290	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ANU27377.1	ANU25850.1	I858_010290	I858_002120	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ANU27377.1	ANU27667.1	I858_010290	I858_011785	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
ANU27667.1	ANU27377.1	I858_011785	I858_010290	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892