7 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_000672	Uncharacterized protein. (1161 aa)
	PHSY_004303	ANAPC5 domain-containing protein. (723 aa)
	PHSY_007003	TPR_REGION domain-containing protein. (775 aa)
	PHSY_006199	APC1_C domain-containing protein. (2141 aa)
	PHSY_006592	CULLIN_2 domain-containing protein; Belongs to the cullin family. (827 aa)
	PHSY_007036	Potential anaphase-promoting complex processivity factor. (316 aa)
	PHSY_007358	Likely anaphase-promoting complex subunit Cdc16. (1068 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000672	PHSY_004303	R9P4R9	R9P5W3	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.997
PHSY_000672	PHSY_006199	R9P4R9	R9PKE7	Uncharacterized protein.	APC1_C domain-containing protein.	0.998
PHSY_000672	PHSY_006592	R9P4R9	R9PLL6	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
PHSY_000672	PHSY_007003	R9P4R9	R9PDU6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.998
PHSY_000672	PHSY_007036	R9P4R9	R9PMV4	Uncharacterized protein.	Potential anaphase-promoting complex processivity factor.	0.998
PHSY_000672	PHSY_007358	R9P4R9	R9PNQ6	Uncharacterized protein.	Likely anaphase-promoting complex subunit Cdc16.	0.998
PHSY_004303	PHSY_000672	R9P5W3	R9P4R9	ANAPC5 domain-containing protein.	Uncharacterized protein.	0.997
PHSY_004303	PHSY_006199	R9P5W3	R9PKE7	ANAPC5 domain-containing protein.	APC1_C domain-containing protein.	0.998
PHSY_004303	PHSY_006592	R9P5W3	R9PLL6	ANAPC5 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.997
PHSY_004303	PHSY_007003	R9P5W3	R9PDU6	ANAPC5 domain-containing protein.	TPR_REGION domain-containing protein.	0.998
PHSY_004303	PHSY_007036	R9P5W3	R9PMV4	ANAPC5 domain-containing protein.	Potential anaphase-promoting complex processivity factor.	0.998
PHSY_004303	PHSY_007358	R9P5W3	R9PNQ6	ANAPC5 domain-containing protein.	Likely anaphase-promoting complex subunit Cdc16.	0.997
PHSY_006199	PHSY_000672	R9PKE7	R9P4R9	APC1_C domain-containing protein.	Uncharacterized protein.	0.998
PHSY_006199	PHSY_004303	R9PKE7	R9P5W3	APC1_C domain-containing protein.	ANAPC5 domain-containing protein.	0.998
PHSY_006199	PHSY_006592	R9PKE7	R9PLL6	APC1_C domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
PHSY_006199	PHSY_007003	R9PKE7	R9PDU6	APC1_C domain-containing protein.	TPR_REGION domain-containing protein.	0.999
PHSY_006199	PHSY_007036	R9PKE7	R9PMV4	APC1_C domain-containing protein.	Potential anaphase-promoting complex processivity factor.	0.998
PHSY_006199	PHSY_007358	R9PKE7	R9PNQ6	APC1_C domain-containing protein.	Likely anaphase-promoting complex subunit Cdc16.	0.998
PHSY_006592	PHSY_000672	R9PLL6	R9P4R9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.998
PHSY_006592	PHSY_004303	R9PLL6	R9P5W3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	ANAPC5 domain-containing protein.	0.997