15 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_000821	Uncharacterized protein. (274 aa)
	PHSY_001274	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (180 aa)
	PHSY_001873	GTP-binding protein. (218 aa)
	PHSY_002876	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily. (1359 aa)
	PHSY_002998	Phosphatidylinositol 3-kinase VPS34. (971 aa)
	PHSY_003527	Uncharacterized protein. (443 aa)
	PHSY_004325	Autophagy-related protein 3. (513 aa)
	PHSY_004670	Potential autophagy related protein Atg2. (2097 aa)
	PHSY_004958	Likely protein kinase. (1015 aa)
	PHSY_005047	Uncharacterized protein. (452 aa)
	PHSY_005356	Uncharacterized protein. (441 aa)
	PHSY_006077	Uncharacterized protein. (1221 aa)
	PHSY_006822	ATG11 domain-containing protein. (1821 aa)
	PHSY_005302	ATG16 domain-containing protein. (252 aa)
	PHSY_005628	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (807 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000821	PHSY_001274	R9NXH5	R9NYE0	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.428
PHSY_000821	PHSY_001873	R9NXH5	R9NZY8	Uncharacterized protein.	GTP-binding protein.	0.859
PHSY_000821	PHSY_004958	R9NXH5	R9P7L2	Uncharacterized protein.	Likely protein kinase.	0.608
PHSY_000821	PHSY_005302	R9NXH5	R9PHY4	Uncharacterized protein.	ATG16 domain-containing protein.	0.926
PHSY_000821	PHSY_005628	R9NXH5	R9PIU9	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.416
PHSY_000821	PHSY_006822	R9NXH5	R9PD85	Uncharacterized protein.	ATG11 domain-containing protein.	0.437
PHSY_001274	PHSY_000821	R9NYE0	R9NXH5	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Uncharacterized protein.	0.428
PHSY_001274	PHSY_002876	R9NYE0	R9P200	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.418
PHSY_001274	PHSY_002998	R9NYE0	R9P2J0	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Phosphatidylinositol 3-kinase VPS34.	0.823
PHSY_001274	PHSY_003527	R9NYE0	R9P3T1	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Uncharacterized protein.	0.937
PHSY_001274	PHSY_004325	R9NYE0	R9P5W7	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Autophagy-related protein 3.	0.996
PHSY_001274	PHSY_004670	R9NYE0	R9P6U8	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Potential autophagy related protein Atg2.	0.511
PHSY_001274	PHSY_004958	R9NYE0	R9P7L2	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Likely protein kinase.	0.963
PHSY_001274	PHSY_005302	R9NYE0	R9PHY4	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	ATG16 domain-containing protein.	0.989
PHSY_001274	PHSY_005628	R9NYE0	R9PIU9	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.657
PHSY_001274	PHSY_006077	R9NYE0	R9PAQ8	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Uncharacterized protein.	0.987
PHSY_001274	PHSY_006822	R9NYE0	R9PD85	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	ATG11 domain-containing protein.	0.641
PHSY_001873	PHSY_000821	R9NZY8	R9NXH5	GTP-binding protein.	Uncharacterized protein.	0.859
PHSY_002876	PHSY_001274	R9P200	R9NYE0	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.418
PHSY_002876	PHSY_002998	R9P200	R9P2J0	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	Phosphatidylinositol 3-kinase VPS34.	0.711