14 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_003337	UmuC domain-containing protein. (671 aa)
	PHSY_004535	Uncharacterized protein. (851 aa)
	PHSY_004568	POLXc domain-containing protein. (746 aa)
	PHSY_002027	Uncharacterized protein. (1480 aa)
	PHSY_004857	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2300 aa)
	PHSY_000064	Possible DNA polymerase delta subunit. (565 aa)
	PHSY_002459	DNA polymerase. (1789 aa)
	PHSY_003480	Potential acid sphingomyelin phosphodiesterase. (513 aa)
	PHSY_003816	HORMA domain-containing protein. (431 aa)
	PHSY_007288	DNA polymerase gamma. (1900 aa)
	PHSY_006943	POLXc domain-containing protein. (1101 aa)
	PHSY_004113	DNA polymerase. (1057 aa)
	PHSY_000198	DNA polymerase. (1680 aa)
	PHSY_004251	Eta DNA polymerase. (866 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000064	PHSY_000198	R9P330	R9NVY0	Possible DNA polymerase delta subunit.	DNA polymerase.	0.974
PHSY_000064	PHSY_002027	R9P330	R9P020	Possible DNA polymerase delta subunit.	Uncharacterized protein.	0.705
PHSY_000064	PHSY_002459	R9P330	R9P118	Possible DNA polymerase delta subunit.	DNA polymerase.	0.721
PHSY_000064	PHSY_003337	R9P330	R9P340	Possible DNA polymerase delta subunit.	UmuC domain-containing protein.	0.488
PHSY_000064	PHSY_003480	R9P330	R9P3U1	Possible DNA polymerase delta subunit.	Potential acid sphingomyelin phosphodiesterase.	0.992
PHSY_000064	PHSY_003816	R9P330	R9P4F6	Possible DNA polymerase delta subunit.	HORMA domain-containing protein.	0.940
PHSY_000064	PHSY_004113	R9P330	R9P514	Possible DNA polymerase delta subunit.	DNA polymerase.	0.987
PHSY_000064	PHSY_004251	R9P330	R9P5G2	Possible DNA polymerase delta subunit.	Eta DNA polymerase.	0.457
PHSY_000064	PHSY_004535	R9P330	R9P6G9	Possible DNA polymerase delta subunit.	Uncharacterized protein.	0.449
PHSY_000064	PHSY_004568	R9P330	R9P6L8	Possible DNA polymerase delta subunit.	POLXc domain-containing protein.	0.463
PHSY_000064	PHSY_004857	R9P330	R9P7N8	Possible DNA polymerase delta subunit.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.820
PHSY_000198	PHSY_000064	R9NVY0	R9P330	DNA polymerase.	Possible DNA polymerase delta subunit.	0.974
PHSY_000198	PHSY_002027	R9NVY0	R9P020	DNA polymerase.	Uncharacterized protein.	0.986
PHSY_000198	PHSY_002459	R9NVY0	R9P118	DNA polymerase.	DNA polymerase.	0.415
PHSY_000198	PHSY_003337	R9NVY0	R9P340	DNA polymerase.	UmuC domain-containing protein.	0.887
PHSY_000198	PHSY_003480	R9NVY0	R9P3U1	DNA polymerase.	Potential acid sphingomyelin phosphodiesterase.	0.984
PHSY_000198	PHSY_003816	R9NVY0	R9P4F6	DNA polymerase.	HORMA domain-containing protein.	0.996
PHSY_000198	PHSY_004113	R9NVY0	R9P514	DNA polymerase.	DNA polymerase.	0.777
PHSY_000198	PHSY_004251	R9NVY0	R9P5G2	DNA polymerase.	Eta DNA polymerase.	0.935
PHSY_000198	PHSY_004535	R9NVY0	R9P6G9	DNA polymerase.	Uncharacterized protein.	0.889