STRINGSTRING
PHSY_006201 PHSY_006201 PHSY_001103 PHSY_001103 PHSY_001606 PHSY_001606 PHSY_001900 PHSY_001900 PHSY_001910 PHSY_001910 PAN2 PAN2 PHSY_002452 PHSY_002452 PHSY_002609 PHSY_002609 PHSY_002838 PHSY_002838 PHSY_003415 PHSY_003415 PHSY_003424 PHSY_003424 PHSY_000280 PHSY_000280 PHSY_003872 PHSY_003872 PHSY_004098 PHSY_004098 PHSY_004113 PHSY_004113 PHSY_004428 PHSY_004428 PHSY_004615 PHSY_004615 PHSY_004857 PHSY_004857 PHSY_001911 PHSY_001911 PHSY_005765 PHSY_005765 PHSY_005671 PHSY_005671 PHSY_006503 PHSY_006503 FEN1 FEN1 PHSY_006658 PHSY_006658 PHSY_006778 PHSY_006778 PHSY_006964 PHSY_006964 PHSY_007019 PHSY_007019 PHSY_007301 PHSY_007301 PHSY_004790 PHSY_004790 PHSY_004880 PHSY_004880 PHSY_005883 PHSY_005883 PHSY_006562 PHSY_006562 PHSY_006657 PHSY_006657 PHSY_006956 PHSY_006956 PHSY_007041 PHSY_007041 PHSY_007288 PHSY_007288
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PHSY_006201Potential mRNA deadenylase and CCR4-NOT complex subunit Pop2p. (300 aa)
PHSY_001103zf-C2HE domain-containing protein. (312 aa)
PHSY_001606Uncharacterized protein. (318 aa)
PHSY_001900Likely nuclear exosome component. (1009 aa)
PHSY_001910DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (147 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1428 aa)
PHSY_002452Uncharacterized protein. (656 aa)
PHSY_0026095'-3' exoribonuclease. (1274 aa)
PHSY_002838Potential mRNA deadenylase. (661 aa)
PHSY_003415Uncharacterized protein; Belongs to the RNR ribonuclease family. (1005 aa)
PHSY_003424Exonuclease. (684 aa)
PHSY_000280DRMBL domain-containing protein. (868 aa)
PHSY_003872Uncharacterized protein. (606 aa)
PHSY_004098Uncharacterized protein. (920 aa)
PHSY_004113DNA polymerase. (1057 aa)
PHSY_004428RNA exonuclease 4. (373 aa)
PHSY_004615DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1381 aa)
PHSY_004857DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2300 aa)
PHSY_001911DNA lyase. (308 aa)
PHSY_005765Uncharacterized protein. (335 aa)
PHSY_005671XPGN domain-containing protein. (740 aa)
PHSY_006503Endo/exonuclease/phosphatase domain-containing protein. (586 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (374 aa)
PHSY_006658Cir_N domain-containing protein. (291 aa)
PHSY_006778DNA repair exonuclease rad1. (493 aa)
PHSY_006964DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (743 aa)
PHSY_007019SAP domain-containing protein. (420 aa)
PHSY_007301RNB domain-containing protein. (1234 aa)
PHSY_004790PKS_ER domain-containing protein. (1817 aa)
PHSY_004880Tyrosyl-DNA phosphodiesterase. (616 aa)
PHSY_005883Mre11_DNA_bind domain-containing protein. (878 aa)
PHSY_0065623'-5' exonuclease domain-containing protein. (590 aa)
PHSY_006657Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (903 aa)
PHSY_006956Uncharacterized protein. (1270 aa)
PHSY_007041Potential Endonuclease/Exonuclease/Phosphatase. (504 aa)
PHSY_007288DNA polymerase gamma. (1900 aa)
Your Current Organism:
Pseudozyma hubeiensis
NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62
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