47 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_003203	Uncharacterized protein. (1140 aa)
	PHSY_007041	Potential Endonuclease/Exonuclease/Phosphatase. (504 aa)
	PHSY_006577	Uncharacterized protein. (1278 aa)
	PHSY_004890	Uncharacterized protein. (317 aa)
	PHSY_007299	Uncharacterized protein. (1632 aa)
	PHSY_007247	Topoisomerase II. (933 aa)
	PHSY_003905	WD_REPEATS_REGION domain-containing protein. (434 aa)
	PHSY_006950	RNA binding repeat containing protein. (1026 aa)
	PHSY_006837	RING-type domain-containing protein. (859 aa)
	PHSY_006814	SAM domain-containing protein. (733 aa)
	PHSY_006201	Potential mRNA deadenylase and CCR4-NOT complex subunit Pop2p. (300 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (810 aa)
	PHSY_006225	WD_REPEATS_REGION domain-containing protein. (378 aa)
	PHSY_005902	RNA polymerase II fourth largest subunit. (160 aa)
	PHSY_005349	RNase_PH domain-containing protein. (316 aa)
	PHSY_005350	RNA binding repeat containing protein. (714 aa)
	PHSY_005305	Probable translation elongation factor. (670 aa)
	PHSY_004992	Potential mRNA deadenylase and CCR4-NOT complex subunit Not5p. (716 aa)
	PHSY_005117	Uncharacterized protein. (400 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (148 aa)
	PHSY_004913	Nudix hydrolase domain-containing protein. (880 aa)
	PHSY_004236	Uncharacterized protein. (304 aa)
	PHSY_003947	Vacuolar membrane-associated protein. (1845 aa)
	PHSY_003961	Uncharacterized protein. (213 aa)
	PHSY_003769	Scavenger mRNA decapping enzyme. (286 aa)
	PHSY_000433	PX domain-containing protein. (590 aa)
	PHSY_003678	PKHD-type hydroxylase. (666 aa)
	PHSY_003394	Indoleamine 2,3-dioxygenase. (1325 aa)
	PHSY_003566	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (371 aa)
	PHSY_000436	WD_REPEATS_REGION domain-containing protein. (640 aa)
	PHSY_000377	Uncharacterized protein. (1853 aa)
	PHSY_000599	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (560 aa)
	PHSY_000759	Likely exosome component. (406 aa)
	PHSY_001033	YTH domain-containing protein. (990 aa)
	PHSY_001445	RNA-binding protein. (1158 aa)
	PHSY_001620	RBR-type E3 ubiquitin transferase. (715 aa)
	PHSY_001645	Uncharacterized protein. (1593 aa)
	PHSY_001900	Likely nuclear exosome component. (1009 aa)
	PHSY_002199	Probable translation elongation factor. (754 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1428 aa)
	PHSY_002437	RNase_PH domain-containing protein. (297 aa)
	PHSY_002838	Potential mRNA deadenylase. (661 aa)
	PHSY_002821	Predicted exosome subunit. (228 aa)
	PHSY_002794	Initiation factor; Belongs to the eIF-2B alpha/beta/delta subunits family. (354 aa)
	PHSY_002989	RNase_PH domain-containing protein. (377 aa)
	PHSY_002877	Likely exosome component. (180 aa)
	PHSY_002972	Potential mRNA deadenylase and CCR4-NOT complex subunit Cdc39p. (2109 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	PHSY_002838	R9P828	R9P1S8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Potential mRNA deadenylase.	0.529
LSM1	PHSY_002972	R9P828	R9P2H3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Potential mRNA deadenylase and CCR4-NOT complex subunit Cdc39p.	0.452
LSM1	PHSY_004913	R9P828	R9P7I4	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Nudix hydrolase domain-containing protein.	0.920
LSM1	PHSY_005117	R9P828	R9P838	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.859
LSM1	PHSY_007247	R9P828	R9PE47	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Topoisomerase II.	0.996
PAN2	PAN3	R9P102	R9PBA2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]	0.999
PAN2	PHSY_002437	R9P102	R9P152	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	RNase_PH domain-containing protein.	0.410
PAN2	PHSY_002821	R9P102	R9P1V7	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	Predicted exosome subunit.	0.410
PAN2	PHSY_002838	R9P102	R9P1S8	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	Potential mRNA deadenylase.	0.722
PAN2	PHSY_002972	R9P102	R9P2H3	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	Potential mRNA deadenylase and CCR4-NOT complex subunit Cdc39p.	0.410
PAN2	PHSY_006201	R9P102	R9PBJ0	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	Potential mRNA deadenylase and CCR4-NOT complex subunit Pop2p.	0.509
PAN2	PHSY_007041	R9P102	R9PMV8	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	Potential Endonuclease/Exonuclease/Phosphatase.	0.516
PAN3	PAN2	R9PBA2	R9P102	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	0.999
PAN3	PHSY_002838	R9PBA2	R9P1S8	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]	Potential mRNA deadenylase.	0.575
PAN3	PHSY_006201	R9PBA2	R9PBJ0	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]	Potential mRNA deadenylase and CCR4-NOT complex subunit Pop2p.	0.457
PHSY_000377	PHSY_001900	R9NWG5	R9NZX0	Uncharacterized protein.	Likely nuclear exosome component.	0.724
PHSY_000377	PHSY_002794	R9NWG5	R9P1X2	Uncharacterized protein.	Initiation factor; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.736
PHSY_000377	PHSY_006225	R9NWG5	R9PB79	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.570
PHSY_000433	PHSY_001645	R9P479	R9NZ99	PX domain-containing protein.	Uncharacterized protein.	0.507
PHSY_000433	PHSY_006950	R9P479	R9PDB7	PX domain-containing protein.	RNA binding repeat containing protein.	0.422