20 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_001690	Cleft lip and palate transmembrane protein. (740 aa)
	PHSY_001909	Uncharacterized protein. (1510 aa)
	PHSY_001865	Uncharacterized protein. (275 aa)
	PHSY_003501	M protein repeat protein. (900 aa)
	PHSY_000672	Uncharacterized protein. (1161 aa)
	PHSY_004298	Chromosome segregation protein. (1332 aa)
	PHSY_004303	ANAPC5 domain-containing protein. (723 aa)
	PHSY_004508	Likely protein kinase. (940 aa)
	PHSY_005017	Uncharacterized protein. (892 aa)
	PHSY_005264	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (331 aa)
	PHSY_005456	Protein kinase subdomain-containing protein. (1166 aa)
	PHSY_005471	Likely protein kinase. (958 aa)
	PHSY_005858	Likely protein kinase. (812 aa)
	PHSY_002930	AAA domain-containing protein; Belongs to the AAA ATPase family. (532 aa)
	PHSY_006821	Uncharacterized protein. (1102 aa)
	PHSY_007003	TPR_REGION domain-containing protein. (775 aa)
	PHSY_007344	HORMA domain-containing protein. (216 aa)
	PHSY_007350	Uncharacterized protein. (391 aa)
	PHSY_005131	Protein phosphatase 2a 65kd regulatory subunit. (650 aa)
	PHSY_007358	Likely anaphase-promoting complex subunit Cdc16. (1068 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000672	PHSY_001909	R9P4R9	R9NZQ0	Uncharacterized protein.	Uncharacterized protein.	0.984
PHSY_000672	PHSY_003501	R9P4R9	R9P3B2	Uncharacterized protein.	M protein repeat protein.	0.901
PHSY_000672	PHSY_004303	R9P4R9	R9P5W3	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.997
PHSY_000672	PHSY_005471	R9P4R9	R9P928	Uncharacterized protein.	Likely protein kinase.	0.464
PHSY_000672	PHSY_005858	R9P4R9	R9PA73	Uncharacterized protein.	Likely protein kinase.	0.875
PHSY_000672	PHSY_007003	R9P4R9	R9PDU6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.998
PHSY_000672	PHSY_007344	R9P4R9	R9PEG2	Uncharacterized protein.	HORMA domain-containing protein.	0.996
PHSY_000672	PHSY_007350	R9P4R9	R9PEQ9	Uncharacterized protein.	Uncharacterized protein.	0.993
PHSY_000672	PHSY_007358	R9P4R9	R9PNQ6	Uncharacterized protein.	Likely anaphase-promoting complex subunit Cdc16.	0.998
PHSY_001690	PHSY_003501	R9NZD2	R9P3B2	Cleft lip and palate transmembrane protein.	M protein repeat protein.	0.586
PHSY_001690	PHSY_007344	R9NZD2	R9PEG2	Cleft lip and palate transmembrane protein.	HORMA domain-containing protein.	0.640
PHSY_001865	PHSY_001909	R9NZR7	R9NZQ0	Uncharacterized protein.	Uncharacterized protein.	0.411
PHSY_001865	PHSY_007350	R9NZR7	R9PEQ9	Uncharacterized protein.	Uncharacterized protein.	0.941
PHSY_001909	PHSY_000672	R9NZQ0	R9P4R9	Uncharacterized protein.	Uncharacterized protein.	0.984
PHSY_001909	PHSY_001865	R9NZQ0	R9NZR7	Uncharacterized protein.	Uncharacterized protein.	0.411
PHSY_001909	PHSY_002930	R9NZQ0	R9PBC9	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.701
PHSY_001909	PHSY_003501	R9NZQ0	R9P3B2	Uncharacterized protein.	M protein repeat protein.	0.980
PHSY_001909	PHSY_004298	R9NZQ0	R9P5V9	Uncharacterized protein.	Chromosome segregation protein.	0.925
PHSY_001909	PHSY_004303	R9NZQ0	R9P5W3	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.969
PHSY_001909	PHSY_004508	R9NZQ0	R9P6G6	Uncharacterized protein.	Likely protein kinase.	0.524