29 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_003480	Potential acid sphingomyelin phosphodiesterase. (513 aa)
	PHSY_000198	DNA polymerase. (1680 aa)
	PHSY_000766	DNA ligase. (1078 aa)
	PHSY_000926	DNA polymerase delta subunit 4. (172 aa)
	PHSY_001006	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (992 aa)
	PHSY_001201	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (440 aa)
	PHSY_001657	Alpha DNA polymerase. (739 aa)
	PHSY_001713	Telomere_reg-2 domain-containing protein. (1007 aa)
	PHSY_002027	Uncharacterized protein. (1480 aa)
	PHSY_002459	DNA polymerase. (1789 aa)
	PHSY_000064	Possible DNA polymerase delta subunit. (565 aa)
	PHSY_003337	UmuC domain-containing protein. (671 aa)
	PHSY_003357	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (793 aa)
	PHSY_003744	DNA_ligase_OB_2 domain-containing protein. (851 aa)
	PHSY_003816	HORMA domain-containing protein. (431 aa)
	PHSY_004113	DNA polymerase. (1057 aa)
	PHSY_004251	Eta DNA polymerase. (866 aa)
	PHSY_000990	Telomere-associated helicase. (620 aa)
	PHSY_004535	Uncharacterized protein. (851 aa)
	PHSY_004568	POLXc domain-containing protein. (746 aa)
	PHSY_004857	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2300 aa)
	PHSY_005177	Uncharacterized protein. (826 aa)
	PHSY_005442	Vezatin domain-containing protein. (1366 aa)
	PHSY_006522	DNA ligase. (847 aa)
	PHSY_006943	POLXc domain-containing protein. (1101 aa)
	PHSY_007133	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1090 aa)
	PHSY_007374	Uncharacterized protein. (518 aa)
	PHSY_004770	DNA repair protein RAD50. (1309 aa)
	PHSY_007288	DNA polymerase gamma. (1900 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000064	PHSY_000198	R9P330	R9NVY0	Possible DNA polymerase delta subunit.	DNA polymerase.	0.974
PHSY_000064	PHSY_000990	R9P330	R9P5Q8	Possible DNA polymerase delta subunit.	Telomere-associated helicase.	0.704
PHSY_000064	PHSY_001006	R9P330	R9NXV4	Possible DNA polymerase delta subunit.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.538
PHSY_000064	PHSY_001201	R9P330	R9NYA5	Possible DNA polymerase delta subunit.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.904
PHSY_000064	PHSY_001657	R9P330	R9NZ19	Possible DNA polymerase delta subunit.	Alpha DNA polymerase.	0.560
PHSY_000064	PHSY_002027	R9P330	R9P020	Possible DNA polymerase delta subunit.	Uncharacterized protein.	0.705
PHSY_000064	PHSY_002459	R9P330	R9P118	Possible DNA polymerase delta subunit.	DNA polymerase.	0.721
PHSY_000064	PHSY_003337	R9P330	R9P340	Possible DNA polymerase delta subunit.	UmuC domain-containing protein.	0.488
PHSY_000064	PHSY_003357	R9P330	R9P362	Possible DNA polymerase delta subunit.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.566
PHSY_000064	PHSY_003480	R9P330	R9P3U1	Possible DNA polymerase delta subunit.	Potential acid sphingomyelin phosphodiesterase.	0.992
PHSY_000064	PHSY_003816	R9P330	R9P4F6	Possible DNA polymerase delta subunit.	HORMA domain-containing protein.	0.940
PHSY_000064	PHSY_004113	R9P330	R9P514	Possible DNA polymerase delta subunit.	DNA polymerase.	0.987
PHSY_000064	PHSY_004251	R9P330	R9P5G2	Possible DNA polymerase delta subunit.	Eta DNA polymerase.	0.457
PHSY_000064	PHSY_004535	R9P330	R9P6G9	Possible DNA polymerase delta subunit.	Uncharacterized protein.	0.449
PHSY_000064	PHSY_004568	R9P330	R9P6L8	Possible DNA polymerase delta subunit.	POLXc domain-containing protein.	0.463
PHSY_000064	PHSY_004770	R9P330	R9PGF2	Possible DNA polymerase delta subunit.	DNA repair protein RAD50.	0.481
PHSY_000064	PHSY_004857	R9P330	R9P7N8	Possible DNA polymerase delta subunit.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.820
PHSY_000064	PHSY_005177	R9P330	R9P894	Possible DNA polymerase delta subunit.	Uncharacterized protein.	0.562
PHSY_000064	PHSY_005442	R9P330	R9P946	Possible DNA polymerase delta subunit.	Vezatin domain-containing protein.	0.904
PHSY_000198	PHSY_000064	R9NVY0	R9P330	DNA polymerase.	Possible DNA polymerase delta subunit.	0.974