47 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_002872	Likely mitochondrial ribosomal protein. (404 aa)
	PHSY_000405	Likely mitochondrial ribosomal protein. (455 aa)
	PHSY_001333	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (360 aa)
	PHSY_001406	Ribosomal_S7 domain-containing protein. (287 aa)
	PHSY_001651	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (370 aa)
	PHSY_001902	Likely mitochondrial ribosome protein. (292 aa)
	PHSY_002161	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (184 aa)
	PHSY_002592	4-coumarate-CoA ligase. (576 aa)
	PHSY_003014	Uncharacterized protein. (294 aa)
	PHSY_003019	50S ribosomal protein L4. (432 aa)
	PHSY_003054	60S ribosomal protein. (208 aa)
	PHSY_003496	30S ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (168 aa)
	PHSY_003610	Likely mitochondrial ribosomal protein; Belongs to the universal ribosomal protein uS2 family. (374 aa)
	PHSY_003663	4-coumarate-CoA ligase. (565 aa)
	PHSY_003978	Likely mitochondrial ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family. (218 aa)
	PHSY_004415	Uncharacterized protein. (119 aa)
	PHSY_004553	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (186 aa)
	PHSY_004588	Likely mitochondrial ribosomal protein L7. (358 aa)
	PHSY_004675	4-coumarate-CoA ligase. (595 aa)
	PHSY_004719	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (132 aa)
	PHSY_001554	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated. (462 aa)
	PHSY_001609	Likely mitochondrial ribosomal protein. (372 aa)
	PHSY_005224	Likely mitochondrial ribosomal protein MRPL3. (569 aa)
	PHSY_005284	Likely mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (209 aa)
	PHSY_002318	Likely mitochondrial ribosomal protein; Belongs to the universal ribosomal protein uL22 family. (355 aa)
	PHSY_005657	4-coumarate-CoA ligase. (528 aa)
	PHSY_002483	Likely mitochondrial ribosomal protein. (469 aa)
	PHSY_005793	Likely mitochondrial ribosomal protein. (345 aa)
	PHSY_002563	Superoxide dismutase. (301 aa)
	PHSY_006247	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (101 aa)
	PHSY_006448	Uncharacterized protein. (469 aa)
	PHSY_003251	Uncharacterized protein. (170 aa)
	PHSY_006826	Uncharacterized protein. (383 aa)
	PHSY_006902	Ribosomal_L30 domain-containing protein. (104 aa)
	PHSY_007017	Uncharacterized protein; Belongs to the complex I LYR family. (325 aa)
	PHSY_007113	Uncharacterized protein. (209 aa)
	PHSY_007156	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (287 aa)
	PHSY_007089	Cytochrome c oxidase assembly protein COX11. (301 aa)
	PHSY_007231	Likely mitochondrial ribosomal protein. (281 aa)
	PHSY_007252	Likely mitochondrial ribosomal protein. (588 aa)
	PHSY_007476	Likely mitochondrial ribosomal protein. (282 aa)
	PHSY_007460	Potential mitochondrial ribosomal protein S21. (204 aa)
	PHSY_004990	Likely mitochondrial ribosomal protein. (157 aa)
	PHSY_005312	Likely mitochondrial ribosomal protein MRPL17p. (312 aa)
	PHSY_005443	Uncharacterized protein. (256 aa)
	PHSY_006470	Likely mitochondrial ribosomal protein Rsm24p. (332 aa)
	PHSY_006728	4-coumarate-CoA ligase. (603 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000405	PHSY_001333	R9NWB3	R9NYC4	Likely mitochondrial ribosomal protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.957
PHSY_000405	PHSY_001406	R9NWB3	R9NYT2	Likely mitochondrial ribosomal protein.	Ribosomal_S7 domain-containing protein.	0.982
PHSY_000405	PHSY_001609	R9NWB3	R9P7F8	Likely mitochondrial ribosomal protein.	Likely mitochondrial ribosomal protein.	0.877
PHSY_000405	PHSY_001651	R9NWB3	R9NZE7	Likely mitochondrial ribosomal protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.989
PHSY_000405	PHSY_001902	R9NWB3	R9NZU4	Likely mitochondrial ribosomal protein.	Likely mitochondrial ribosome protein.	0.983
PHSY_000405	PHSY_002161	R9NWB3	R9P073	Likely mitochondrial ribosomal protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.905
PHSY_000405	PHSY_002318	R9NWB3	R9P9I2	Likely mitochondrial ribosomal protein.	Likely mitochondrial ribosomal protein; Belongs to the universal ribosomal protein uL22 family.	0.957
PHSY_000405	PHSY_002483	R9NWB3	R9PA17	Likely mitochondrial ribosomal protein.	Likely mitochondrial ribosomal protein.	0.957
PHSY_000405	PHSY_002563	R9NWB3	R9PA77	Likely mitochondrial ribosomal protein.	Superoxide dismutase.	0.911
PHSY_000405	PHSY_002872	R9NWB3	R9P277	Likely mitochondrial ribosomal protein.	Likely mitochondrial ribosomal protein.	0.979
PHSY_000405	PHSY_003014	R9NWB3	R9P254	Likely mitochondrial ribosomal protein.	Uncharacterized protein.	0.582
PHSY_000405	PHSY_003019	R9NWB3	R9P257	Likely mitochondrial ribosomal protein.	50S ribosomal protein L4.	0.978
PHSY_000405	PHSY_003054	R9NWB3	R9P278	Likely mitochondrial ribosomal protein.	60S ribosomal protein.	0.958
PHSY_000405	PHSY_003251	R9NWB3	R9PC69	Likely mitochondrial ribosomal protein.	Uncharacterized protein.	0.949
PHSY_000405	PHSY_003496	R9NWB3	R9P3A8	Likely mitochondrial ribosomal protein.	30S ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.979
PHSY_000405	PHSY_003610	R9NWB3	R9P3U3	Likely mitochondrial ribosomal protein.	Likely mitochondrial ribosomal protein; Belongs to the universal ribosomal protein uS2 family.	0.980
PHSY_000405	PHSY_003978	R9NWB3	R9P4P6	Likely mitochondrial ribosomal protein.	Likely mitochondrial ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.	0.926
PHSY_000405	PHSY_004415	R9NWB3	R9P670	Likely mitochondrial ribosomal protein.	Uncharacterized protein.	0.877
PHSY_000405	PHSY_004553	R9NWB3	R9P6K4	Likely mitochondrial ribosomal protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.984
PHSY_000405	PHSY_004588	R9NWB3	R9P6N9	Likely mitochondrial ribosomal protein.	Likely mitochondrial ribosomal protein L7.	0.956