75 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_007418	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
	PHSY_007408	Potential subunit common to RNA polymerase I, II and III. (138 aa)
	PHSY_007203	PCI domain-containing protein. (475 aa)
	PHSY_007092	AAA domain-containing protein. (343 aa)
	PHSY_007031	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (643 aa)
	PHSY_006395	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (264 aa)
	PHSY_005071	Ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family. (1453 aa)
	PHSY_007369	Uncharacterized protein. (948 aa)
	PHSY_007304	PAPA-1 domain-containing protein. (520 aa)
	PHSY_007023	RING-type domain-containing protein. (361 aa)
	PHSY_007121	Uncharacterized protein. (1927 aa)
	PHSY_006958	TFIIS central domain-containing protein. (1173 aa)
	PHSY_006994	MPN domain-containing protein. (564 aa)
	PHSY_003639	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
	PHSY_003351	CYCLIN domain-containing protein; Belongs to the cyclin family. (467 aa)
	PHSY_006636	Potential transcriptional repressor subunit. (639 aa)
	PHSY_006621	AAA domain-containing protein. (353 aa)
	PHSY_006633	Calmodulin. (157 aa)
	PHSY_006472	Uncharacterized protein. (316 aa)
	PHSY_006618	Uncharacterized protein. (422 aa)
	PHSY_006312	RNA_pol_L_2 domain-containing protein. (144 aa)
	PHSY_005960	Ubiquitin-like domain-containing protein. (355 aa)
	PHSY_002775	Single-stranded DNA endonuclease. (992 aa)
	PHSY_005902	RNA polymerase II fourth largest subunit. (160 aa)
	PHSY_005856	RRM domain-containing protein. (186 aa)
	PHSY_002518	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (1237 aa)
	PHSY_005788	DNA repair helicase. (849 aa)
	PHSY_002438	PCI domain-containing protein. (515 aa)
	PHSY_005772	Single-stranded DNA binding protein 12k chain. (142 aa)
	PHSY_005420	UDP-galactopyranose mutase. (503 aa)
	PHSY_005554	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (507 aa)
	PHSY_005341	Uncharacterized protein. (614 aa)
	PHSY_005303	Actin; Belongs to the actin family. (798 aa)
	PHSY_005177	Uncharacterized protein. (826 aa)
	PHSY_004651	Transcription elongation factor. (172 aa)
	PHSY_004636	Uncharacterized protein. (546 aa)
	PHSY_004505	Arg-6 protein, mitochondrial. (351 aa)
	PHSY_004383	AAA domain-containing protein. (384 aa)
	PHSY_004264	Uncharacterized protein. (536 aa)
	PHSY_003942	TPR_REGION domain-containing protein. (465 aa)
	PHSY_000555	CBFD_NFYB_HMF domain-containing protein. (226 aa)
	PHSY_003566	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (371 aa)
	PHSY_003357	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (793 aa)
	PHSY_003337	UmuC domain-containing protein. (671 aa)
	PHSY_000069	MPN domain-containing protein. (469 aa)
	PHSY_000064	Possible DNA polymerase delta subunit. (565 aa)
	PHSY_002942	CULLIN_2 domain-containing protein; Belongs to the cullin family. (823 aa)
	PHSY_002657	Telomere length regulation protein. (1172 aa)
	PHSY_002647	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (435 aa)
	PHSY_002713	Peptidyl-prolyl cis-trans isomerase. (401 aa)
	PHSY_002668	Excision repair protein. (316 aa)
	PHSY_002429	Ubiquitin. (228 aa)
	PHSY_002359	AAA domain-containing protein. (341 aa)
	PHSY_002391	Ubiquitin. (159 aa)
	PHSY_002376	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (891 aa)
	PHSY_001681	Single-stranded DNA binding protein. (136 aa)
	PHSY_001443	Replication factor C subunit 1. (958 aa)
	PHSY_001506	PCI domain-containing protein. (576 aa)
	PHSY_001379	PCI domain-containing protein. (305 aa)
	PHSY_001307	RPOLD domain-containing protein. (364 aa)
	PHSY_001079	Potential regulator of cell polarity. (1251 aa)
	PHSY_001021	DNA repair protein. (359 aa)
	PHSY_001138	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (1117 aa)
	PHSY_000961	Pre-mRNA-splicing factor. (1512 aa)
	PHSY_000926	DNA polymerase delta subunit 4. (172 aa)
	PHSY_000806	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1783 aa)
	PHSY_000825	RNA polymerase subunit. (208 aa)
	PHSY_000832	TPR_REGION domain-containing protein. (1089 aa)
	PHSY_000791	Potential vacuolar protein sorting protein. (182 aa)
	PHSY_000711	Uncharacterized protein. (249 aa)
	PHSY_000690	Ubiquitin. (305 aa)
	PHSY_000582	Ubiquitin. (433 aa)
	PHSY_000468	Uncharacterized protein. (1516 aa)
	PHSY_000543	Uncharacterized protein. (421 aa)
	PHSY_000523	Uncharacterized protein. (200 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000064	PHSY_000468	R9P330	R9NWK1	Possible DNA polymerase delta subunit.	Uncharacterized protein.	0.415
PHSY_000064	PHSY_001443	R9P330	R9NYV2	Possible DNA polymerase delta subunit.	Replication factor C subunit 1.	0.569
PHSY_000064	PHSY_001681	R9P330	R9NZH1	Possible DNA polymerase delta subunit.	Single-stranded DNA binding protein.	0.402
PHSY_000064	PHSY_002359	R9P330	R9P0T7	Possible DNA polymerase delta subunit.	AAA domain-containing protein.	0.567
PHSY_000064	PHSY_002657	R9P330	R9P1Q3	Possible DNA polymerase delta subunit.	Telomere length regulation protein.	0.647
PHSY_000064	PHSY_003337	R9P330	R9P340	Possible DNA polymerase delta subunit.	UmuC domain-containing protein.	0.488
PHSY_000064	PHSY_003357	R9P330	R9P362	Possible DNA polymerase delta subunit.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.566
PHSY_000064	PHSY_004383	R9P330	R9P640	Possible DNA polymerase delta subunit.	AAA domain-containing protein.	0.550
PHSY_000064	PHSY_005177	R9P330	R9P894	Possible DNA polymerase delta subunit.	Uncharacterized protein.	0.562
PHSY_000064	PHSY_006621	R9P330	R9PCE2	Possible DNA polymerase delta subunit.	AAA domain-containing protein.	0.566
PHSY_000064	PHSY_007092	R9P330	R9PMZ7	Possible DNA polymerase delta subunit.	AAA domain-containing protein.	0.568
PHSY_000069	PHSY_000523	R9P333	R9NWH6	MPN domain-containing protein.	Uncharacterized protein.	0.639
PHSY_000069	PHSY_000543	R9P333	R9NWJ1	MPN domain-containing protein.	Uncharacterized protein.	0.737
PHSY_000069	PHSY_000582	R9P333	R9NWW0	MPN domain-containing protein.	Ubiquitin.	0.762
PHSY_000069	PHSY_000690	R9P333	R9NWX1	MPN domain-containing protein.	Ubiquitin.	0.804
PHSY_000069	PHSY_000806	R9P333	R9NXG0	MPN domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.660
PHSY_000069	PHSY_000825	R9P333	R9NXF2	MPN domain-containing protein.	RNA polymerase subunit.	0.718
PHSY_000069	PHSY_000961	R9P333	R9NXS0	MPN domain-containing protein.	Pre-mRNA-splicing factor.	0.924
PHSY_000069	PHSY_001307	R9P333	R9NYL7	MPN domain-containing protein.	RPOLD domain-containing protein.	0.700
PHSY_000069	PHSY_001379	R9P333	R9NYM8	MPN domain-containing protein.	PCI domain-containing protein.	0.987