16 items (Pseudozyma hubeiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_000070	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (682 aa)
	PHSY_000543	Uncharacterized protein. (421 aa)
	PHSY_000548	Uncharacterized protein. (272 aa)
	PHSY_007073	Proteasome activator. (268 aa)
	PHSY_006662	CipC protein. (202 aa)
	PHSY_006134	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (287 aa)
	PHSY_005971	G2/mitotic-specific cyclin CYB1; Belongs to the cyclin family. (461 aa)
	PHSY_005545	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (298 aa)
	PHSY_005329	Uncharacterized protein. (788 aa)
	PHSY_004303	ANAPC5 domain-containing protein. (723 aa)
	PHSY_003874	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (325 aa)
	PHSY_002429	Ubiquitin. (228 aa)
	PHSY_002391	Ubiquitin. (159 aa)
	PHSY_001693	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (543 aa)
	PHSY_001373	AAA domain-containing protein. (757 aa)
	PHSY_000690	Ubiquitin. (305 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000070	PHSY_000543	R9NVR4	R9NWJ1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.621
PHSY_000070	PHSY_000690	R9NVR4	R9NWX1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Ubiquitin.	0.643
PHSY_000070	PHSY_001373	R9NVR4	R9NYG0	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	AAA domain-containing protein.	0.912
PHSY_000070	PHSY_001693	R9NVR4	R9NZD0	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.899
PHSY_000070	PHSY_002391	R9NVR4	R9P0T2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Ubiquitin.	0.621
PHSY_000070	PHSY_002429	R9NVR4	R9P101	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Ubiquitin.	0.643
PHSY_000070	PHSY_003874	R9NVR4	R9P4R2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.940
PHSY_000070	PHSY_004303	R9NVR4	R9P5W3	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	ANAPC5 domain-containing protein.	0.817
PHSY_000070	PHSY_005329	R9NVR4	R9P8Z9	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.730
PHSY_000070	PHSY_005545	R9NVR4	R9P9N9	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.984
PHSY_000070	PHSY_006134	R9NVR4	R9PK96	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.624
PHSY_000543	PHSY_000070	R9NWJ1	R9NVR4	Uncharacterized protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.621
PHSY_000543	PHSY_000548	R9NWJ1	R9NWJ5	Uncharacterized protein.	Uncharacterized protein.	0.573
PHSY_000543	PHSY_000690	R9NWJ1	R9NWX1	Uncharacterized protein.	Ubiquitin.	0.880
PHSY_000543	PHSY_001373	R9NWJ1	R9NYG0	Uncharacterized protein.	AAA domain-containing protein.	0.664
PHSY_000543	PHSY_001693	R9NWJ1	R9NZD0	Uncharacterized protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.621
PHSY_000543	PHSY_002429	R9NWJ1	R9P101	Uncharacterized protein.	Ubiquitin.	0.880
PHSY_000543	PHSY_003874	R9NWJ1	R9P4R2	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.679
PHSY_000543	PHSY_004303	R9NWJ1	R9P5W3	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.710
PHSY_000543	PHSY_005329	R9NWJ1	R9P8Z9	Uncharacterized protein.	Uncharacterized protein.	0.631