(27 nodes) RNA Polymerase I Transcription network (Pseudozyma hubeiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHSY_004459	Uncharacterized protein. (352 aa)
	PHSY_004449	Ribosomal DNA transcription factor. (863 aa)
	PHSY_007416	BTB domain-containing protein. (681 aa)
	PHSY_007369	Uncharacterized protein. (948 aa)
	PHSY_004055	Histone H2B; Belongs to the histone H2B family. (142 aa)
	PHSY_007023	RING-type domain-containing protein. (361 aa)
	PHSY_007091	Uncharacterized protein. (2161 aa)
	PHSY_003639	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
	PHSY_003351	CYCLIN domain-containing protein; Belongs to the cyclin family. (467 aa)
	PHSY_006618	Uncharacterized protein. (422 aa)
	PHSY_006126	RPOLD domain-containing protein. (379 aa)
	PHSY_006238	Uncharacterized protein. (240 aa)
	PHSY_006076	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	PHSY_006183	Ubiquitin. (181 aa)
	PHSY_002518	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (1237 aa)
	PHSY_005788	DNA repair helicase. (849 aa)
	PHSY_005554	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (507 aa)
	PHSY_005341	Uncharacterized protein. (614 aa)
	PHSY_001259	Uncharacterized protein. (524 aa)
	PHSY_003566	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (371 aa)
	PHSY_004772	Uncharacterized protein. (994 aa)
	PHSY_000523	Uncharacterized protein. (200 aa)
	PHSY_000825	RNA polymerase subunit. (208 aa)
	PHSY_004712	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1288 aa)
	PHSY_001148	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1792 aa)
	PHSY_007408	Potential subunit common to RNA polymerase I, II and III. (138 aa)
	PHSY_004479	Nucleolar protein. (621 aa)

Your Current Organism:

Pseudozyma hubeiensis

NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHSY_000523	PHSY_000825	R9NWH6	R9NXF2	Uncharacterized protein.	RNA polymerase subunit.	0.998
PHSY_000523	PHSY_001148	R9NWH6	R9NXW6	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
PHSY_000523	PHSY_001259	R9NWH6	R9NYC7	Uncharacterized protein.	Uncharacterized protein.	0.982
PHSY_000523	PHSY_002518	R9NWH6	R9PA43	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.955
PHSY_000523	PHSY_003351	R9NWH6	R9PCI0	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.899
PHSY_000523	PHSY_003566	R9NWH6	R9P3G3	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.824
PHSY_000523	PHSY_003639	R9NWH6	R9PD82	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.997
PHSY_000523	PHSY_004055	R9NWH6	R9PEF5	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.911
PHSY_000523	PHSY_004449	R9NWH6	R9PFM5	Uncharacterized protein.	Ribosomal DNA transcription factor.	0.958
PHSY_000523	PHSY_004459	R9NWH6	R9PFN4	Uncharacterized protein.	Uncharacterized protein.	0.991
PHSY_000523	PHSY_004712	R9NWH6	R9P797	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
PHSY_000523	PHSY_004772	R9NWH6	R9P7F6	Uncharacterized protein.	Uncharacterized protein.	0.785
PHSY_000523	PHSY_005341	R9NWH6	R9P8T2	Uncharacterized protein.	Uncharacterized protein.	0.955
PHSY_000523	PHSY_005554	R9NWH6	R9P9C2	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.955
PHSY_000523	PHSY_005788	R9NWH6	R9PA18	Uncharacterized protein.	DNA repair helicase.	0.957
PHSY_000523	PHSY_006076	R9NWH6	R9PB71	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.996
PHSY_000523	PHSY_006126	R9NWH6	R9PBB7	Uncharacterized protein.	RPOLD domain-containing protein.	0.998
PHSY_000523	PHSY_006183	R9NWH6	R9PB63	Uncharacterized protein.	Ubiquitin.	0.785
PHSY_000523	PHSY_006238	R9NWH6	R9PBB5	Uncharacterized protein.	Uncharacterized protein.	0.977
PHSY_000523	PHSY_006618	R9NWH6	R9PCC1	Uncharacterized protein.	Uncharacterized protein.	0.955