(7 nodes) ACT domain network (Flavobacterium commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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protein homology

Your Input:
	AOZ98681.1	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AOZ98699.1	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (804 aa)
	AOZ99565.1	Phosphoserine phosphatase SerB; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
	AOZ99978.1	RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (739 aa)
	APA00456.1	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (815 aa)
	APA00507.1	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	purU	Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (284 aa)

Your Current Organism:

Flavobacterium commune

NCBI taxonomy Id: 1306519
Other names: F. commune, Flavobacterium commune Ekwe and Kim 2018, Flavobacterium communis, Flavobacterium sp. PK15, JCM 32115, KCTC 52562, strain PK15

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOZ98681.1	AOZ98699.1	BIW12_04095	BIW12_04190	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AOZ98681.1	APA00456.1	BIW12_04095	BIW12_14065	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AOZ98681.1	APA00507.1	BIW12_04095	BIW12_14345	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AOZ98699.1	AOZ98681.1	BIW12_04190	BIW12_04095	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AOZ98699.1	AOZ99565.1	BIW12_04190	BIW12_08995	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoserine phosphatase SerB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AOZ98699.1	APA00456.1	BIW12_04190	BIW12_14065	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AOZ98699.1	APA00507.1	BIW12_04190	BIW12_14345	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AOZ99565.1	AOZ98699.1	BIW12_08995	BIW12_04190	Phosphoserine phosphatase SerB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AOZ99565.1	APA00456.1	BIW12_08995	BIW12_14065	Phosphoserine phosphatase SerB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
APA00456.1	AOZ98681.1	BIW12_14065	BIW12_04095	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
APA00456.1	AOZ98699.1	BIW12_14065	BIW12_04190	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
APA00456.1	AOZ99565.1	BIW12_14065	BIW12_08995	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoserine phosphatase SerB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
APA00456.1	APA00507.1	BIW12_14065	BIW12_14345	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
APA00507.1	AOZ98681.1	BIW12_14345	BIW12_04095	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
APA00507.1	AOZ98699.1	BIW12_14345	BIW12_04190	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
APA00507.1	APA00456.1	BIW12_14345	BIW12_14065	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822

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