(44 nodes) TonB-dependent Receptor Plug Domain network (Flavobacterium commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOZ97961.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1030 aa)
	AOZ97992.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1099 aa)
	APA00830.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (808 aa)
	AOZ98269.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)
	AOZ98319.1	Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)
	AOZ98337.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (780 aa)
	AOZ98406.1	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1015 aa)
	AOZ98596.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1062 aa)
	APA00864.1	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1165 aa)
	AOZ98770.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1062 aa)
	AOZ98774.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1091 aa)
	AOZ98788.1	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1024 aa)
	AOZ98840.1	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1034 aa)
	APA00883.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1010 aa)
	AOZ98930.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (960 aa)
	AOZ98962.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	AOZ98965.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (756 aa)
	AOZ99033.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (945 aa)
	AOZ99227.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1117 aa)
	APA00910.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (990 aa)
	AOZ99384.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (922 aa)
	AOZ99442.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (725 aa)
	AOZ99507.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (786 aa)
	AOZ99509.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (936 aa)
	APA00943.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1076 aa)
	AOZ99701.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1050 aa)
	AOZ99705.1	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1015 aa)
	AOZ99753.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1004 aa)
	APA00958.1	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1017 aa)
	AOZ99793.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1087 aa)
	AOZ99811.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1059 aa)
	AOZ99813.1	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1013 aa)
	AOZ99844.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (849 aa)
	AOZ99888.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (817 aa)
	APA00985.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1071 aa)
	APA00080.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
	APA00115.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1003 aa)
	APA00999.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (643 aa)
	APA00261.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1029 aa)
	APA01015.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (844 aa)
	APA00306.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1063 aa)
	APA01019.1	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1073 aa)
	APA01052.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (685 aa)
	APA00751.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (807 aa)

Your Current Organism:

Flavobacterium commune

NCBI taxonomy Id: 1306519
Other names: F. commune, Flavobacterium commune Ekwe and Kim 2018, Flavobacterium communis, Flavobacterium sp. PK15, JCM 32115, KCTC 52562, strain PK15

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOZ98269.1	AOZ99753.1	BIW12_01775	BIW12_10040	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AOZ98319.1	APA00115.1	BIW12_02030	BIW12_12130	Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AOZ98319.1	APA00943.1	BIW12_02030	BIW12_09420	Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AOZ98596.1	AOZ99442.1	BIW12_03610	BIW12_08290	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AOZ98770.1	AOZ98774.1	BIW12_04585	BIW12_04605	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
AOZ98770.1	APA00751.1	BIW12_04585	BIW12_15685	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.463
AOZ98774.1	AOZ98770.1	BIW12_04605	BIW12_04585	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
AOZ98774.1	APA00751.1	BIW12_04605	BIW12_15685	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.457
AOZ98962.1	AOZ98965.1	BIW12_05675	BIW12_05690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AOZ98965.1	AOZ98962.1	BIW12_05690	BIW12_05675	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AOZ99442.1	AOZ98596.1	BIW12_08290	BIW12_03610	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AOZ99442.1	AOZ99793.1	BIW12_08290	BIW12_10290	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
AOZ99442.1	APA00115.1	BIW12_08290	BIW12_12130	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AOZ99442.1	APA01015.1	BIW12_08290	BIW12_13035	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
AOZ99507.1	AOZ99509.1	BIW12_08660	BIW12_08670	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AOZ99509.1	AOZ99507.1	BIW12_08670	BIW12_08660	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.492
AOZ99753.1	AOZ98269.1	BIW12_10040	BIW12_01775	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AOZ99793.1	AOZ99442.1	BIW12_10290	BIW12_08290	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AOZ99811.1	AOZ99813.1	BIW12_10405	BIW12_10415	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AOZ99813.1	AOZ99811.1	BIW12_10415	BIW12_10405	SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747

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