(105 nodes) Recognition of DNA damage by PCNA-containing replication complex network (Peniophora sp. CONT)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A166B8U4	Uncharacterized protein. (519 aa)
	A0A166B3F7	WD_REPEATS_REGION domain-containing protein. (1169 aa)
	A0A166AXE8	Uncharacterized protein. (148 aa)
	A0A166AXC3	Uncharacterized protein. (108 aa)
	A0A166ATA3	Ubiquitin carboxyl-terminal hydrolase. (694 aa)
	A0A166AQB7	WD40 repeat-like protein. (346 aa)
	A0A166AA96	Zds_C domain-containing protein. (729 aa)
	A0A165ZZU9	Uncharacterized protein. (232 aa)
	A0A165YYB1	Uncharacterized protein. (233 aa)
	A0A165YP10	Uncharacterized protein. (109 aa)
	A0A165YNA3	RING/U-box. (109 aa)
	A0A165YGP4	Uncharacterized protein. (428 aa)
	A0A165YET2	Uncharacterized protein. (246 aa)
	A0A165YAT0	Ubiquitin/40s ribosomal protein S27a fusion. (159 aa)
	A0A165XV32	Gag_pre-integrs domain-containing protein. (79 aa)
	A0A165XIW3	Uncharacterized protein. (155 aa)
	A0A165XI94	Uncharacterized protein. (152 aa)
	A0A165XDI0	Uncharacterized protein. (50 aa)
	A0A165XDG2	Uncharacterized protein. (97 aa)
	A0A165XBG9	Chromo domain-containing protein. (100 aa)
	A0A165X7S8	Uncharacterized protein. (55 aa)
	A0A165X548	Uncharacterized protein. (299 aa)
	A0A165X4R2	Integrase_H2C2 domain-containing protein. (65 aa)
	A0A165X444	Uncharacterized protein. (114 aa)
	A0A165X3G7	Uncharacterized protein. (205 aa)
	A0A165X3C5	Uncharacterized protein. (111 aa)
	A0A165X2X3	Uncharacterized protein. (89 aa)
	A0A165X2W8	Uncharacterized protein. (112 aa)
	A0A165X2E9	Uncharacterized protein. (63 aa)
	A0A165X1G2	Uncharacterized protein. (297 aa)
	A0A165X1E6	Uncharacterized protein. (136 aa)
	A0A165X127	Uncharacterized protein. (201 aa)
	A0A165X0R8	Uncharacterized protein. (158 aa)
	A0A165X0P5	Uncharacterized protein. (108 aa)
	A0A165X039	Uncharacterized protein. (67 aa)
	A0A165X027	CCHC-type domain-containing protein. (696 aa)
	A0A165X018	Uncharacterized protein. (124 aa)
	A0A165X006	Uncharacterized protein. (249 aa)
	A0A165WZX3	Uncharacterized protein. (96 aa)
	A0A165WZV2	Uncharacterized protein. (81 aa)
	A0A165WZU0	Uncharacterized protein. (120 aa)
	A0A165WZ05	Uncharacterized protein. (175 aa)
	A0A165WYY6	Uncharacterized protein. (124 aa)
	A0A165WYV9	Uncharacterized protein. (647 aa)
	A0A165WWP1	Uncharacterized protein. (84 aa)
	A0A165WVU0	Uncharacterized protein. (303 aa)
	A0A165WVT4	Uncharacterized protein. (197 aa)
	A0A165WVQ5	CCHC-type domain-containing protein. (429 aa)
	A0A165WV32	Uncharacterized protein. (115 aa)
	A0A165WTV3	Uncharacterized protein. (197 aa)
	A0A165WTU0	Uncharacterized protein. (189 aa)
	A0A165WT13	Uncharacterized protein. (103 aa)
	A0A165WST8	Uncharacterized protein. (114 aa)
	A0A165WRJ4	Uncharacterized protein. (148 aa)
	A0A165WLV9	Uncharacterized protein. (213 aa)
	A0A165WLU2	Uncharacterized protein. (51 aa)
	A0A165WLQ9	Uncharacterized protein. (175 aa)
	A0A165WLJ9	Uncharacterized protein. (111 aa)
	A0A165WL59	WD40 repeat-like protein. (395 aa)
	A0A165WKS4	Uncharacterized protein. (205 aa)
	A0A165WK43	Uncharacterized protein. (143 aa)
	A0A165WI69	Uncharacterized protein. (351 aa)
	A0A165WI36	Uncharacterized protein. (77 aa)
	A0A165WI35	Uncharacterized protein. (146 aa)
	A0A165WI29	Uncharacterized protein. (72 aa)
	A0A165WI09	Uncharacterized protein. (72 aa)
	A0A165WH36	Uncharacterized protein. (173 aa)
	A0A165WDW1	Uncharacterized protein. (88 aa)
	A0A165WDA7	Uncharacterized protein. (118 aa)
	A0A165WD61	Uncharacterized protein. (161 aa)
	A0A165WC92	Integrase catalytic domain-containing protein. (76 aa)
	A0A165WBM3	Uncharacterized protein. (178 aa)
	A0A165WBA0	Uncharacterized protein. (243 aa)
	A0A165WB35	Uncharacterized protein. (89 aa)
	A0A165WAW3	Uncharacterized protein. (101 aa)
	A0A165WAK7	Uncharacterized protein. (398 aa)
	A0A165WA36	Uncharacterized protein. (83 aa)
	A0A165WMY2	Uncharacterized protein. (98 aa)
	A0A166L2J5	Chromo-domain-containing protein. (452 aa)
	A0A166KTI4	BHLH domain-containing protein. (1221 aa)
	A0A166KD55	Polyubiquitin. (305 aa)
	A0A166K7S9	Uncharacterized protein. (480 aa)
	A0A166K2Y4	Cullin-domain-containing protein; Belongs to the cullin family. (792 aa)
	A0A166IK56	Uncharacterized protein. (97 aa)
	A0A166IK27	Uncharacterized protein. (759 aa)
	A0A166HTL2	Uncharacterized protein. (111 aa)
	A0A166G7V6	Uncharacterized protein. (198 aa)
	A0A166G3M4	Uncharacterized protein. (830 aa)
	A0A166G0N4	RING-type domain-containing protein. (406 aa)
	A0A166FNF2	CBFD_NFYB_HMF domain-containing protein. (353 aa)
	A0A166EZV1	Uncharacterized protein. (96 aa)
	A0A166EZR4	Uncharacterized protein. (81 aa)
	A0A166EZP2	Uncharacterized protein. (120 aa)
	A0A166EVT2	WD40 repeat-like protein. (399 aa)
	A0A166EII6	CPSF_A domain-containing protein. (1235 aa)
	A0A166DZY1	Uncharacterized protein. (99 aa)
	A0A166DZW8	Uncharacterized protein. (66 aa)
	A0A166DDD3	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (170 aa)
	A0A166CZH2	Myb_DNA-bind_3 domain-containing protein. (230 aa)
	A0A166CUH3	Uncharacterized protein. (444 aa)
	A0A166CMY6	Uncharacterized protein. (232 aa)
	A0A166CI92	Uncharacterized protein. (115 aa)
	A0A166CI48	Uncharacterized protein. (88 aa)
	A0A166BSH5	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (600 aa)
	A0A166BSF6	Uncharacterized protein. (1108 aa)

Your Current Organism:

Peniophora sp. CONT

NCBI taxonomy Id: 1314672
Other names: P. sp. CONT

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165WA36	A0A165YAT0	Uncharacterized protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.446
A0A165WA36	A0A166BSF6	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A165WA36	A0A166BSH5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.567
A0A165WAK7	A0A165YAT0	Uncharacterized protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.446
A0A165WAK7	A0A166BSF6	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A165WAK7	A0A166BSH5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.584
A0A165WAW3	A0A165YAT0	Uncharacterized protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.446
A0A165WAW3	A0A166BSF6	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A165WAW3	A0A166BSH5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.584
A0A165WB35	A0A165YAT0	Uncharacterized protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.446
A0A165WB35	A0A166BSF6	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A165WB35	A0A166BSH5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.584
A0A165WBA0	A0A165YAT0	Uncharacterized protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.446
A0A165WBA0	A0A166BSF6	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A165WBA0	A0A166BSH5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.584
A0A165WBM3	A0A165WYY6	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A165WBM3	A0A165X018	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A165WBM3	A0A165YAT0	Uncharacterized protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.446
A0A165WBM3	A0A166BSF6	Uncharacterized protein.	Uncharacterized protein.	0.567
A0A165WBM3	A0A166BSH5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.584