(38 nodes) Butanoate metabolism network (Bacillus cohnii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BC6307_10960	Unannotated protein. (228 aa)
	BC6307_11105	Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (422 aa)
	BC6307_11100	Unannotated protein. (285 aa)
	BC6307_11085	Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
	BC6307_04145	Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	BC6307_13135	Unannotated protein. (256 aa)
	BC6307_18870	Unannotated protein. (794 aa)
	BC6307_22180	Unannotated protein. (379 aa)
	BC6307_22190	Unannotated protein. (283 aa)
	BC6307_22200	Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
	BC6307_06300	Unannotated protein. (310 aa)
	BC6307_06140	Unannotated protein. (138 aa)
	BC6307_06005	Unannotated protein. (359 aa)
	BC6307_05945	Unannotated protein. (522 aa)
	BC6307_08345	Unannotated protein. (256 aa)
	BC6307_18330	Unannotated protein. (339 aa)
	BC6307_18295	Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (435 aa)
	BC6307_18195	Unannotated protein. (594 aa)
	BC6307_14585	Unannotated protein. (298 aa)
	buk	Unannotated protein; Belongs to the acetokinase family. (369 aa)
	BC6307_16555	Unannotated protein. (585 aa)
	BC6307_16550	Unannotated protein. (253 aa)
	BC6307_16805	Unannotated protein. (158 aa)
	BC6307_14125	Unannotated protein. (743 aa)
	BC6307_10955	Unannotated protein. (247 aa)
	BC6307_14095	Unannotated protein. (298 aa)
	BC6307_14090	Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
	BC6307_14085	Unannotated protein. (229 aa)
	BC6307_14080	Unannotated protein. (222 aa)
	BC6307_02260	Unannotated protein. (174 aa)
	BC6307_02255	Unannotated protein. (569 aa)
	BC6307_16560	Unannotated protein. (202 aa)
	BC6307_12235	Unannotated protein. (577 aa)
	BC6307_12230	Unannotated protein. (288 aa)
	BC6307_02470	Unannotated protein. (504 aa)
	GCA_001591425_03222	Unannotated protein. (81 aa)
	GCA_001591425_03223	Unannotated protein. (72 aa)
	BC6307_17380	Unannotated protein. (258 aa)

Your Current Organism:

Bacillus cohnii

NCBI taxonomy Id: 1314751
Other names: B. cohnii NBRC 15565, Bacillus cohnii NBRC 15565

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BC6307_02255	BC6307_02260	GCA_001591425_01823	GCA_001591425_01822	Unannotated protein.	Unannotated protein.	0.999
BC6307_02255	BC6307_02470	GCA_001591425_01823	GCA_001591425_03144	Unannotated protein.	Unannotated protein.	0.564
BC6307_02255	BC6307_06005	GCA_001591425_01823	GCA_001591425_00084	Unannotated protein.	Unannotated protein.	0.861
BC6307_02255	BC6307_06140	GCA_001591425_01823	GCA_001591425_00057	Unannotated protein.	Unannotated protein.	0.468
BC6307_02255	BC6307_12230	GCA_001591425_01823	GCA_001591425_02465	Unannotated protein.	Unannotated protein.	0.849
BC6307_02255	BC6307_12235	GCA_001591425_01823	GCA_001591425_02464	Unannotated protein.	Unannotated protein.	0.847
BC6307_02255	BC6307_14095	GCA_001591425_01823	GCA_001591425_01649	Unannotated protein.	Unannotated protein.	0.730
BC6307_02255	BC6307_14125	GCA_001591425_01823	GCA_001591425_01642	Unannotated protein.	Unannotated protein.	0.721
BC6307_02255	BC6307_14585	GCA_001591425_01823	GCA_001591425_01022	Unannotated protein.	Unannotated protein.	0.619
BC6307_02255	BC6307_16550	GCA_001591425_01823	GCA_001591425_04155	Unannotated protein.	Unannotated protein.	0.640
BC6307_02255	BC6307_16805	GCA_001591425_01823	GCA_001591425_04076	Unannotated protein.	Unannotated protein.	0.468
BC6307_02255	BC6307_18295	GCA_001591425_01823	GCA_001591425_00731	Unannotated protein.	Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.512
BC6307_02255	BC6307_18870	GCA_001591425_01823	GCA_001591425_04369	Unannotated protein.	Unannotated protein.	0.421
BC6307_02255	BC6307_22180	GCA_001591425_01823	GCA_001591425_04304	Unannotated protein.	Unannotated protein.	0.404
BC6307_02260	BC6307_02255	GCA_001591425_01822	GCA_001591425_01823	Unannotated protein.	Unannotated protein.	0.999
BC6307_02260	BC6307_06005	GCA_001591425_01822	GCA_001591425_00084	Unannotated protein.	Unannotated protein.	0.928
BC6307_02260	BC6307_12230	GCA_001591425_01822	GCA_001591425_02465	Unannotated protein.	Unannotated protein.	0.826
BC6307_02260	BC6307_12235	GCA_001591425_01822	GCA_001591425_02464	Unannotated protein.	Unannotated protein.	0.771
BC6307_02260	BC6307_14095	GCA_001591425_01822	GCA_001591425_01649	Unannotated protein.	Unannotated protein.	0.827
BC6307_02260	BC6307_14585	GCA_001591425_01822	GCA_001591425_01022	Unannotated protein.	Unannotated protein.	0.451