(45 nodes) Respiratory electron transport network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165IWX9	Transmembrane di-heme cytochrome. (106 aa)
	A0A165M7Z4	LuxS/MPP-like metallohydrolase. (427 aa)
	A0A165MJZ7	Uncharacterized protein. (184 aa)
	A0A165N2B5	F-box domain-containing protein. (502 aa)
	A0A165N2K0	F-box domain-containing protein. (505 aa)
	A0A165N8K1	Cytochrome c oxidase subunit IV. (172 aa)
	A0A165N9K9	NDUFA2, NADH ubiquinone oxidoreductase 10.5kD subunit. (93 aa)
	A0A165NA88	F420H2 dehydrogenase; Belongs to the complex I 30 kDa subunit family. (273 aa)
	A0A165NSC8	Uncharacterized protein. (245 aa)
	A0A165PML1	Uncharacterized protein. (80 aa)
	A0A165PS59	NADH-ubiquinone oxidoreductase 20 kDa subunit; Belongs to the complex I 20 kDa subunit family. (233 aa)
	A0A165PS65	Uncharacterized protein. (1038 aa)
	A0A165QDI7	Uncharacterized protein. (102 aa)
	A0A165QTL8	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. (560 aa)
	A0A165QWY4	NdufA6 NADH-ubiquinone oxidoreductase 14.8 kDa subunit; Belongs to the complex I LYR family. (138 aa)
	A0A165R4G0	Cytochrome-c from the OXPHOS pathway; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (108 aa)
	A0A165RG96	Ubiquinol-cytochrome c r. (282 aa)
	A0A165RQ93	Uncharacterized protein. (247 aa)
	A0A165RZ93	Uncharacterized protein. (77 aa)
	A0A165S1Z3	Uncharacterized protein. (146 aa)
	A0A165S2G5	NDUFB9, NADH-ubiquinone oxidoreductase; Belongs to the complex I LYR family. (108 aa)
	A0A165S2P6	Uncharacterized protein. (124 aa)
	A0A165S2X1	Ndufs8, NADH:ubiquinone oxidoreductase 23 kd subunit. (243 aa)
	A0A165T330	NADH-ubiquinone oxidoreductase 75kD subunit; Belongs to the complex I 75 kDa subunit family. (742 aa)
	A0A165TQF1	Ubiquinol-cytochrome C reductase. (65 aa)
	A0A165TQL0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (140 aa)
	A0A165TUZ6	Uncharacterized protein. (102 aa)
	A0A165TZP0	NAD(P)-binding protein. (368 aa)
	A0A165U4B6	COX5A-domain-containing protein. (129 aa)
	A0A165U7J8	Cytochrome c domain-containing protein. (333 aa)
	A0A165URC0	Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family. (126 aa)
	A0A165UWT2	Uncharacterized protein; Belongs to the peptidase M16 family. (474 aa)
	A0A165V0P2	Pyrid_ox_like domain-containing protein. (205 aa)
	A0A165V1C4	Uncharacterized protein. (66 aa)
	A0A165V795	Uncharacterized protein. (219 aa)
	A0A165V984	NADH-ubiquinone oxidoreductase; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (155 aa)
	A0A165VJ68	Uncharacterized protein. (161 aa)
	A0A165VMW7	COX5B-domain-containing protein. (155 aa)
	A0A165VN79	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. (82 aa)
	A0A165VZ77	Uncharacterized protein. (132 aa)
	A0A165W0W7	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (123 aa)
	A0A165W2R6	zf-CHCC domain-containing protein. (147 aa)
	A0A165W3F2	Mitochondrial cytochrome c oxidase subunit VIa; Belongs to the cytochrome c oxidase subunit 6A family. (130 aa)
	A0A165W8X8	NAD(P)-binding protein. (328 aa)
	A0A165WCK9	Ndufs2, NADH:ubiquinone oxidoreductase 49 kd subunit; Belongs to the complex I 49 kDa subunit family. (456 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165IWX9	A0A165M7Z4	Transmembrane di-heme cytochrome.	LuxS/MPP-like metallohydrolase.	0.995
A0A165IWX9	A0A165MJZ7	Transmembrane di-heme cytochrome.	Uncharacterized protein.	0.912
A0A165IWX9	A0A165N2B5	Transmembrane di-heme cytochrome.	F-box domain-containing protein.	0.960
A0A165IWX9	A0A165N2K0	Transmembrane di-heme cytochrome.	F-box domain-containing protein.	0.960
A0A165IWX9	A0A165N8K1	Transmembrane di-heme cytochrome.	Cytochrome c oxidase subunit IV.	0.960
A0A165IWX9	A0A165N9K9	Transmembrane di-heme cytochrome.	NDUFA2, NADH ubiquinone oxidoreductase 10.5kD subunit.	0.909
A0A165IWX9	A0A165NA88	Transmembrane di-heme cytochrome.	F420H2 dehydrogenase; Belongs to the complex I 30 kDa subunit family.	0.988
A0A165IWX9	A0A165NSC8	Transmembrane di-heme cytochrome.	Uncharacterized protein.	0.999
A0A165IWX9	A0A165PML1	Transmembrane di-heme cytochrome.	Uncharacterized protein.	0.938
A0A165IWX9	A0A165PS59	Transmembrane di-heme cytochrome.	NADH-ubiquinone oxidoreductase 20 kDa subunit; Belongs to the complex I 20 kDa subunit family.	0.977
A0A165IWX9	A0A165PS65	Transmembrane di-heme cytochrome.	Uncharacterized protein.	0.977
A0A165IWX9	A0A165QDI7	Transmembrane di-heme cytochrome.	Uncharacterized protein.	0.996
A0A165IWX9	A0A165QTL8	Transmembrane di-heme cytochrome.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.985
A0A165IWX9	A0A165QWY4	Transmembrane di-heme cytochrome.	NdufA6 NADH-ubiquinone oxidoreductase 14.8 kDa subunit; Belongs to the complex I LYR family.	0.908
A0A165IWX9	A0A165R4G0	Transmembrane di-heme cytochrome.	Cytochrome-c from the OXPHOS pathway; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.982
A0A165IWX9	A0A165RG96	Transmembrane di-heme cytochrome.	Ubiquinol-cytochrome c r.	0.999
A0A165IWX9	A0A165RQ93	Transmembrane di-heme cytochrome.	Uncharacterized protein.	0.983
A0A165IWX9	A0A165RZ93	Transmembrane di-heme cytochrome.	Uncharacterized protein.	0.917
A0A165IWX9	A0A165S1Z3	Transmembrane di-heme cytochrome.	Uncharacterized protein.	0.872
A0A165IWX9	A0A165S2G5	Transmembrane di-heme cytochrome.	NDUFB9, NADH-ubiquinone oxidoreductase; Belongs to the complex I LYR family.	0.910