(21 nodes) Mixed, incl. dUTP metabolic process, and Mif2/CENP-C like network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165M564	Uncharacterized protein. (329 aa)
	A0A165MGC6	Uncharacterized protein. (316 aa)
	A0A165MTC9	Uncharacterized protein. (433 aa)
	A0A165N732	CENP-C_C domain-containing protein. (466 aa)
	A0A165NPE3	Uncharacterized protein. (526 aa)
	A0A165NW26	Uncharacterized protein. (324 aa)
	A0A165NZ63	Glycoside hydrolase family 71 protein. (492 aa)
	A0A165P086	Zn(2)-C6 fungal-type domain-containing protein. (849 aa)
	A0A165PV17	Uncharacterized protein. (316 aa)
	A0A165Q4P6	Copper radical oxidase. (769 aa)
	A0A165R2H3	Uncharacterized protein. (621 aa)
	A0A165R9H0	Uncharacterized protein. (436 aa)
	A0A165RL39	CENP-C_C domain-containing protein. (588 aa)
	A0A165SVT5	Uncharacterized protein. (173 aa)
	A0A165TEU1	Copper radical oxidase. (751 aa)
	A0A165UJ04	Uncharacterized protein. (449 aa)
	A0A165VEB2	Uncharacterized protein. (449 aa)
	A0A165VFD8	Uncharacterized protein. (292 aa)
	A0A165VKG1	Uncharacterized protein. (316 aa)
	A0A165W242	Uncharacterized protein. (516 aa)
	A0A165WBI2	Uncharacterized protein. (366 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165MGC6	A0A165MTC9	Uncharacterized protein.	Uncharacterized protein.	0.640
A0A165MGC6	A0A165N732	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.650
A0A165MGC6	A0A165NZ63	Uncharacterized protein.	Glycoside hydrolase family 71 protein.	0.640
A0A165MGC6	A0A165Q4P6	Uncharacterized protein.	Copper radical oxidase.	0.640
A0A165MGC6	A0A165RL39	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.650
A0A165MGC6	A0A165TEU1	Uncharacterized protein.	Copper radical oxidase.	0.640
A0A165MGC6	A0A165UJ04	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A165MGC6	A0A165VEB2	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A165MGC6	A0A165VFD8	Uncharacterized protein.	Uncharacterized protein.	0.640
A0A165MGC6	A0A165W242	Uncharacterized protein.	Uncharacterized protein.	0.640
A0A165MTC9	A0A165MGC6	Uncharacterized protein.	Uncharacterized protein.	0.640
A0A165MTC9	A0A165N732	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.466
A0A165MTC9	A0A165PV17	Uncharacterized protein.	Uncharacterized protein.	0.640
A0A165MTC9	A0A165RL39	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.466
A0A165MTC9	A0A165VKG1	Uncharacterized protein.	Uncharacterized protein.	0.640
A0A165MTC9	A0A165WBI2	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A165N732	A0A165MGC6	CENP-C_C domain-containing protein.	Uncharacterized protein.	0.650
A0A165N732	A0A165MTC9	CENP-C_C domain-containing protein.	Uncharacterized protein.	0.466
A0A165N732	A0A165NZ63	CENP-C_C domain-containing protein.	Glycoside hydrolase family 71 protein.	0.466
A0A165N732	A0A165PV17	CENP-C_C domain-containing protein.	Uncharacterized protein.	0.650