(23 nodes) Mixed, incl. Retroviral aspartyl protease, and Retrotransposon gag domain network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165M710	Retrotrans_gag domain-containing protein. (154 aa)
	A0A165NG93	DNA/RNA polymerase. (381 aa)
	A0A165NGB3	Uncharacterized protein. (81 aa)
	A0A165NHN2	Uncharacterized protein. (359 aa)
	A0A165NPD0	Uncharacterized protein. (86 aa)
	A0A165PXL8	Uncharacterized protein. (294 aa)
	A0A165QID6	Uncharacterized protein. (300 aa)
	A0A165QUA5	Uncharacterized protein. (144 aa)
	A0A165R6T1	Uncharacterized protein. (160 aa)
	A0A165R6T9	Uncharacterized protein. (57 aa)
	A0A165RYE7	Uncharacterized protein. (99 aa)
	A0A165S332	Uncharacterized protein. (104 aa)
	A0A165T4X3	Uncharacterized protein. (102 aa)
	A0A165T4Z0	Uncharacterized protein. (267 aa)
	A0A165T524	Uncharacterized protein. (92 aa)
	A0A165UHW2	Uncharacterized protein. (81 aa)
	A0A165UHZ2	Uncharacterized protein. (185 aa)
	A0A165UHZ5	Retrotrans_gag domain-containing protein. (156 aa)
	A0A165VB94	Retrotrans_gag domain-containing protein. (135 aa)
	A0A165VBA9	Uncharacterized protein. (70 aa)
	A0A165VBC2	Uncharacterized protein. (81 aa)
	A0A165VDD0	Uncharacterized protein. (242 aa)
	A0A165VDD5	Uncharacterized protein. (147 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165NG93	A0A165QID6	DNA/RNA polymerase.	Uncharacterized protein.	0.478
A0A165NGB3	A0A165NHN2	Uncharacterized protein.	Uncharacterized protein.	0.400
A0A165NGB3	A0A165R6T9	Uncharacterized protein.	Uncharacterized protein.	0.488
A0A165NGB3	A0A165T4Z0	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A165NGB3	A0A165VDD0	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A165NHN2	A0A165NGB3	Uncharacterized protein.	Uncharacterized protein.	0.400
A0A165NHN2	A0A165QUA5	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A165NHN2	A0A165S332	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A165NHN2	A0A165UHW2	Uncharacterized protein.	Uncharacterized protein.	0.410
A0A165NHN2	A0A165VDD5	Uncharacterized protein.	Uncharacterized protein.	0.480
A0A165PXL8	A0A165QUA5	Uncharacterized protein.	Uncharacterized protein.	0.435
A0A165PXL8	A0A165VDD5	Uncharacterized protein.	Uncharacterized protein.	0.457
A0A165QID6	A0A165NG93	Uncharacterized protein.	DNA/RNA polymerase.	0.478
A0A165QID6	A0A165QUA5	Uncharacterized protein.	Uncharacterized protein.	0.431
A0A165QID6	A0A165VDD5	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A165QUA5	A0A165NHN2	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A165QUA5	A0A165PXL8	Uncharacterized protein.	Uncharacterized protein.	0.435
A0A165QUA5	A0A165QID6	Uncharacterized protein.	Uncharacterized protein.	0.431
A0A165QUA5	A0A165R6T1	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A165QUA5	A0A165RYE7	Uncharacterized protein.	Uncharacterized protein.	0.464