(6 nodes) U4 snRNA 3-end processing network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165MK41	Uncharacterized protein. (227 aa)
	A0A165PLC4	Exosome complex exonuclease rrp4. (318 aa)
	A0A165S771	RNase_PH domain-containing protein. (308 aa)
	A0A165VD55	RNase_PH domain-containing protein. (289 aa)
	A0A165VN02	Uncharacterized protein. (269 aa)
	A0A165VV32	Ribosomal protein S5 domain 2-like protein. (332 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165MK41	A0A165PLC4	Uncharacterized protein.	Exosome complex exonuclease rrp4.	0.999
A0A165MK41	A0A165S771	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
A0A165MK41	A0A165VD55	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
A0A165MK41	A0A165VN02	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A165MK41	A0A165VV32	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A165PLC4	A0A165MK41	Exosome complex exonuclease rrp4.	Uncharacterized protein.	0.999
A0A165PLC4	A0A165S771	Exosome complex exonuclease rrp4.	RNase_PH domain-containing protein.	0.999
A0A165PLC4	A0A165VD55	Exosome complex exonuclease rrp4.	RNase_PH domain-containing protein.	0.999
A0A165PLC4	A0A165VN02	Exosome complex exonuclease rrp4.	Uncharacterized protein.	0.999
A0A165PLC4	A0A165VV32	Exosome complex exonuclease rrp4.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A165S771	A0A165MK41	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
A0A165S771	A0A165PLC4	RNase_PH domain-containing protein.	Exosome complex exonuclease rrp4.	0.999
A0A165S771	A0A165VD55	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
A0A165S771	A0A165VN02	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
A0A165S771	A0A165VV32	RNase_PH domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A165VD55	A0A165MK41	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
A0A165VD55	A0A165PLC4	RNase_PH domain-containing protein.	Exosome complex exonuclease rrp4.	0.999
A0A165VD55	A0A165S771	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
A0A165VD55	A0A165VN02	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
A0A165VD55	A0A165VV32	RNase_PH domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.999