(5 nodes) U2 snRNP network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165MAA1	DUF382-domain-containing protein. (587 aa)
	A0A165QCR1	CPSF_A domain-containing protein. (1213 aa)
	A0A165RNL8	Uncharacterized protein. (296 aa)
	A0A165UAR5	Small nuclear ribonucleo protein. (1144 aa)
	A0A165V7C7	RNA-binding domain-containing protein. (123 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165MAA1	A0A165QCR1	DUF382-domain-containing protein.	CPSF_A domain-containing protein.	0.999
A0A165MAA1	A0A165RNL8	DUF382-domain-containing protein.	Uncharacterized protein.	0.999
A0A165MAA1	A0A165UAR5	DUF382-domain-containing protein.	Small nuclear ribonucleo protein.	0.999
A0A165MAA1	A0A165V7C7	DUF382-domain-containing protein.	RNA-binding domain-containing protein.	0.999
A0A165QCR1	A0A165MAA1	CPSF_A domain-containing protein.	DUF382-domain-containing protein.	0.999
A0A165QCR1	A0A165RNL8	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
A0A165QCR1	A0A165UAR5	CPSF_A domain-containing protein.	Small nuclear ribonucleo protein.	0.999
A0A165QCR1	A0A165V7C7	CPSF_A domain-containing protein.	RNA-binding domain-containing protein.	0.999
A0A165RNL8	A0A165MAA1	Uncharacterized protein.	DUF382-domain-containing protein.	0.999
A0A165RNL8	A0A165QCR1	Uncharacterized protein.	CPSF_A domain-containing protein.	0.999
A0A165RNL8	A0A165UAR5	Uncharacterized protein.	Small nuclear ribonucleo protein.	0.999
A0A165RNL8	A0A165V7C7	Uncharacterized protein.	RNA-binding domain-containing protein.	0.999
A0A165UAR5	A0A165MAA1	Small nuclear ribonucleo protein.	DUF382-domain-containing protein.	0.999
A0A165UAR5	A0A165QCR1	Small nuclear ribonucleo protein.	CPSF_A domain-containing protein.	0.999
A0A165UAR5	A0A165RNL8	Small nuclear ribonucleo protein.	Uncharacterized protein.	0.999
A0A165UAR5	A0A165V7C7	Small nuclear ribonucleo protein.	RNA-binding domain-containing protein.	0.999
A0A165V7C7	A0A165MAA1	RNA-binding domain-containing protein.	DUF382-domain-containing protein.	0.999
A0A165V7C7	A0A165QCR1	RNA-binding domain-containing protein.	CPSF_A domain-containing protein.	0.999
A0A165V7C7	A0A165RNL8	RNA-binding domain-containing protein.	Uncharacterized protein.	0.999
A0A165V7C7	A0A165UAR5	RNA-binding domain-containing protein.	Small nuclear ribonucleo protein.	0.999