(10 nodes) Mixed, incl. CCAAT-binding factor complex, and CMG complex assembly network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165MYE1	Histone-fold-containing protein. (145 aa)
	A0A165ND05	Uncharacterized protein. (328 aa)
	A0A165NNP4	Uncharacterized protein. (187 aa)
	A0A165PQ60	Uncharacterized protein. (798 aa)
	A0A165R345	Uncharacterized protein. (90 aa)
	A0A165SHZ4	Uncharacterized protein. (715 aa)
	A0A165TNZ4	Uncharacterized protein. (398 aa)
	A0A165UYJ2	CBFD_NFYB_HMF domain-containing protein. (215 aa)
	A0A165VAM0	GATA-type domain-containing protein. (401 aa)
	A0A165VYC9	Uncharacterized protein. (896 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165MYE1	A0A165ND05	Histone-fold-containing protein.	Uncharacterized protein.	0.970
A0A165MYE1	A0A165NNP4	Histone-fold-containing protein.	Uncharacterized protein.	0.996
A0A165MYE1	A0A165PQ60	Histone-fold-containing protein.	Uncharacterized protein.	0.582
A0A165MYE1	A0A165R345	Histone-fold-containing protein.	Uncharacterized protein.	0.656
A0A165MYE1	A0A165SHZ4	Histone-fold-containing protein.	Uncharacterized protein.	0.664
A0A165MYE1	A0A165UYJ2	Histone-fold-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.970
A0A165MYE1	A0A165VAM0	Histone-fold-containing protein.	GATA-type domain-containing protein.	0.664
A0A165ND05	A0A165MYE1	Uncharacterized protein.	Histone-fold-containing protein.	0.970
A0A165ND05	A0A165NNP4	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A165ND05	A0A165PQ60	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A165ND05	A0A165R345	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A165ND05	A0A165SHZ4	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A165ND05	A0A165VAM0	Uncharacterized protein.	GATA-type domain-containing protein.	0.533
A0A165NNP4	A0A165MYE1	Uncharacterized protein.	Histone-fold-containing protein.	0.996
A0A165NNP4	A0A165ND05	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A165NNP4	A0A165PQ60	Uncharacterized protein.	Uncharacterized protein.	0.425
A0A165NNP4	A0A165R345	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A165NNP4	A0A165SHZ4	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A165NNP4	A0A165UYJ2	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.970
A0A165NNP4	A0A165VAM0	Uncharacterized protein.	GATA-type domain-containing protein.	0.409