(25 nodes) snRNA metabolic process network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165S096	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (160 aa)
	A0A165S658	Uncharacterized protein. (82 aa)
	A0A165S771	RNase_PH domain-containing protein. (308 aa)
	A0A165S5J8	Pre-mRNA splicing factor. (1212 aa)
	A0A165S162	CCHC-type domain-containing protein. (296 aa)
	A0A165PLC4	Exosome complex exonuclease rrp4. (318 aa)
	A0A165P241	Pseudouridine synthase. (587 aa)
	A0A165NRY1	Uncharacterized protein. (346 aa)
	A0A165SNV8	Uncharacterized protein. (487 aa)
	A0A165TA02	Ribosomal protein S5 domain 2-like protein. (262 aa)
	A0A165TI27	Uncharacterized protein. (399 aa)
	A0A165TLQ7	tRNA pseudouridine synthase D. (776 aa)
	A0A165TUI3	Ribonuclease H-like protein. (554 aa)
	A0A165UFN5	Bin3-domain-containing protein. (272 aa)
	A0A165USA5	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (140 aa)
	A0A165UX46	HRDC domain-containing protein. (862 aa)
	A0A165V9W7	Ribonuclease III. (327 aa)
	A0A165VD55	RNase_PH domain-containing protein. (289 aa)
	A0A165VN02	Uncharacterized protein. (269 aa)
	A0A165VS93	Ribosomal protein S5 domain 2-like protein. (296 aa)
	A0A165VV32	Ribosomal protein S5 domain 2-like protein. (332 aa)
	A0A165W1K3	Putative rRNA pseudouridine synthase. (527 aa)
	A0A165WB77	C1D-domain-containing protein. (286 aa)
	A0A165MK41	Uncharacterized protein. (227 aa)
	A0A165LAE1	tRNA pseudouridine synthase D. (561 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165LAE1	A0A165S096	tRNA pseudouridine synthase D.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.474
A0A165LAE1	A0A165W1K3	tRNA pseudouridine synthase D.	Putative rRNA pseudouridine synthase.	0.444
A0A165MK41	A0A165PLC4	Uncharacterized protein.	Exosome complex exonuclease rrp4.	0.999
A0A165MK41	A0A165S096	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.755
A0A165MK41	A0A165S5J8	Uncharacterized protein.	Pre-mRNA splicing factor.	0.668
A0A165MK41	A0A165S771	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
A0A165MK41	A0A165TA02	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.997
A0A165MK41	A0A165UX46	Uncharacterized protein.	HRDC domain-containing protein.	0.468
A0A165MK41	A0A165VD55	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
A0A165MK41	A0A165VN02	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A165MK41	A0A165VS93	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A165MK41	A0A165VV32	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A165MK41	A0A165WB77	Uncharacterized protein.	C1D-domain-containing protein.	0.986
A0A165P241	A0A165S096	Pseudouridine synthase.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.474
A0A165P241	A0A165W1K3	Pseudouridine synthase.	Putative rRNA pseudouridine synthase.	0.444
A0A165PLC4	A0A165MK41	Exosome complex exonuclease rrp4.	Uncharacterized protein.	0.999
A0A165PLC4	A0A165S096	Exosome complex exonuclease rrp4.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.774
A0A165PLC4	A0A165S5J8	Exosome complex exonuclease rrp4.	Pre-mRNA splicing factor.	0.688
A0A165PLC4	A0A165S771	Exosome complex exonuclease rrp4.	RNase_PH domain-containing protein.	0.999
A0A165PLC4	A0A165TA02	Exosome complex exonuclease rrp4.	Ribosomal protein S5 domain 2-like protein.	0.998