(31 nodes) Endoribonuclease activity, producing 5-phosphomonoesters network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165T162	Uncharacterized protein. (181 aa)
	A0A165KIL8	DNA_pol_B_2 domain-containing protein. (519 aa)
	A0A165MD60	Piwi-domain-containing protein; Belongs to the argonaute family. (1004 aa)
	A0A165MLZ7	Uncharacterized protein. (201 aa)
	A0A165MMU7	DBR1-domain-containing protein. (490 aa)
	A0A165MQ92	RNase H domain-containing protein. (352 aa)
	A0A165NEC5	POP1-domain-containing protein. (845 aa)
	A0A165NV17	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (309 aa)
	A0A165P176	Argonaute-like protein. (892 aa)
	A0A165PE76	Uncharacterized protein. (959 aa)
	A0A165PWX7	Uncharacterized protein. (313 aa)
	A0A165QAS0	RNase H domain-containing protein. (379 aa)
	A0A165QAT8	RNase H domain-containing protein. (314 aa)
	A0A165QDC0	Argonaute-like protein. (1001 aa)
	A0A165QMB8	Uncharacterized protein. (483 aa)
	A0A165QZG5	RNase H domain-containing protein. (320 aa)
	A0A165RJC5	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (314 aa)
	A0A165RNS1	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the helicase family. Dicer subfamily. (1457 aa)
	A0A165RZ87	Uncharacterized protein. (1376 aa)
	A0A165S0G6	Metallo-hydrolase/oxidoreductase. (385 aa)
	A0A165SGN0	RNase III domain-containing protein. (162 aa)
	A0A165SQV3	PHP domain-like protein. (376 aa)
	A0A165T0I8	Uncharacterized protein. (1223 aa)
	A0A165TI48	Uncharacterized protein. (333 aa)
	A0A165U0Z1	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the helicase family. Dicer subfamily. (1452 aa)
	A0A165UA70	60S ribosomal protein L3. (351 aa)
	A0A165UE89	RNase H domain-containing protein. (143 aa)
	A0A165V307	Nudix hydrolase domain-containing protein. (466 aa)
	A0A165V4D5	Rpr2-domain-containing protein. (224 aa)
	A0A165V9W7	Ribonuclease III. (327 aa)
	A0A165VZI6	Lactamase_B domain-containing protein. (378 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165KIL8	A0A165MD60	DNA_pol_B_2 domain-containing protein.	Piwi-domain-containing protein; Belongs to the argonaute family.	0.753
A0A165KIL8	A0A165P176	DNA_pol_B_2 domain-containing protein.	Argonaute-like protein.	0.753
A0A165KIL8	A0A165QDC0	DNA_pol_B_2 domain-containing protein.	Argonaute-like protein.	0.753
A0A165MD60	A0A165KIL8	Piwi-domain-containing protein; Belongs to the argonaute family.	DNA_pol_B_2 domain-containing protein.	0.753
A0A165MD60	A0A165QMB8	Piwi-domain-containing protein; Belongs to the argonaute family.	Uncharacterized protein.	0.753
A0A165MD60	A0A165RNS1	Piwi-domain-containing protein; Belongs to the argonaute family.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the helicase family. Dicer subfamily.	0.871
A0A165MD60	A0A165RZ87	Piwi-domain-containing protein; Belongs to the argonaute family.	Uncharacterized protein.	0.871
A0A165MD60	A0A165SGN0	Piwi-domain-containing protein; Belongs to the argonaute family.	RNase III domain-containing protein.	0.802
A0A165MD60	A0A165U0Z1	Piwi-domain-containing protein; Belongs to the argonaute family.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the helicase family. Dicer subfamily.	0.871
A0A165MD60	A0A165UA70	Piwi-domain-containing protein; Belongs to the argonaute family.	60S ribosomal protein L3.	0.737
A0A165MD60	A0A165V9W7	Piwi-domain-containing protein; Belongs to the argonaute family.	Ribonuclease III.	0.800
A0A165MLZ7	A0A165NV17	Uncharacterized protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.664
A0A165MLZ7	A0A165V307	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.615
A0A165MQ92	A0A165NV17	RNase H domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.685
A0A165MQ92	A0A165V307	RNase H domain-containing protein.	Nudix hydrolase domain-containing protein.	0.615
A0A165NEC5	A0A165PWX7	POP1-domain-containing protein.	Uncharacterized protein.	0.973
A0A165NEC5	A0A165SQV3	POP1-domain-containing protein.	PHP domain-like protein.	0.998
A0A165NEC5	A0A165V4D5	POP1-domain-containing protein.	Rpr2-domain-containing protein.	0.997
A0A165NV17	A0A165MLZ7	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Uncharacterized protein.	0.664
A0A165NV17	A0A165MQ92	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	RNase H domain-containing protein.	0.685