(16 nodes) 5-3 DNA helicase activity network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165UTM5	Uncharacterized protein. (51 aa)
	A0A165QA00	ATP-dependent DNA helicase; Belongs to the helicase family. (276 aa)
	A0A165QA07	Uncharacterized protein. (164 aa)
	A0A165QA21	Uncharacterized protein. (114 aa)
	A0A165QDZ9	P-loop containing nucleoside triphosphate hydrolase protein. (800 aa)
	A0A165QK74	Uncharacterized protein. (684 aa)
	A0A165R2Q7	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (472 aa)
	A0A165SX67	Uncharacterized protein. (91 aa)
	A0A165T4K5	Uncharacterized protein. (85 aa)
	A0A165T4K9	ATP-dependent DNA helicase; Belongs to the helicase family. (187 aa)
	A0A165T694	DNA repair helicase. (795 aa)
	A0A165U0U9	Uncharacterized protein. (106 aa)
	A0A165U5E8	Uncharacterized protein. (102 aa)
	A0A165UBQ1	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (447 aa)
	A0A165UD67	Uncharacterized protein. (63 aa)
	A0A165UGA1	Uncharacterized protein. (106 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165QA00	A0A165QA07	ATP-dependent DNA helicase; Belongs to the helicase family.	Uncharacterized protein.	0.944
A0A165QA00	A0A165T4K5	ATP-dependent DNA helicase; Belongs to the helicase family.	Uncharacterized protein.	0.520
A0A165QA07	A0A165QA00	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family.	0.944
A0A165QA07	A0A165T4K5	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A165QA07	A0A165T4K9	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family.	0.508
A0A165T4K5	A0A165QA00	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family.	0.520
A0A165T4K5	A0A165QA07	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A165T4K5	A0A165T4K9	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family.	0.523
A0A165T4K9	A0A165QA07	ATP-dependent DNA helicase; Belongs to the helicase family.	Uncharacterized protein.	0.508
A0A165T4K9	A0A165T4K5	ATP-dependent DNA helicase; Belongs to the helicase family.	Uncharacterized protein.	0.523