(11 nodes) Nuclear-transcribed mRNA catabolic process, non-stop decay network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165P1Y5	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (423 aa)
	A0A165S771	RNase_PH domain-containing protein. (308 aa)
	A0A165SFM4	Histone H2A; Belongs to the histone H2A family. (144 aa)
	A0A165TA02	Ribosomal protein S5 domain 2-like protein. (262 aa)
	A0A165U2D6	Antiviral helicase. (1237 aa)
	A0A165UDC6	TPR-like protein. (1408 aa)
	A0A165VD55	RNase_PH domain-containing protein. (289 aa)
	A0A165VEU1	WD40 repeat-like protein. (312 aa)
	A0A165VN02	Uncharacterized protein. (269 aa)
	A0A165VS93	Ribosomal protein S5 domain 2-like protein. (296 aa)
	A0A165W196	S1 motif domain-containing protein. (185 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165P1Y5	A0A165U2D6	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	Antiviral helicase.	0.657
A0A165P1Y5	A0A165UDC6	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	TPR-like protein.	0.535
A0A165S771	A0A165TA02	RNase_PH domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A165S771	A0A165U2D6	RNase_PH domain-containing protein.	Antiviral helicase.	0.934
A0A165S771	A0A165UDC6	RNase_PH domain-containing protein.	TPR-like protein.	0.859
A0A165S771	A0A165VD55	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
A0A165S771	A0A165VEU1	RNase_PH domain-containing protein.	WD40 repeat-like protein.	0.783
A0A165S771	A0A165VN02	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
A0A165S771	A0A165VS93	RNase_PH domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A165S771	A0A165W196	RNase_PH domain-containing protein.	S1 motif domain-containing protein.	0.999
A0A165TA02	A0A165S771	Ribosomal protein S5 domain 2-like protein.	RNase_PH domain-containing protein.	0.999
A0A165TA02	A0A165U2D6	Ribosomal protein S5 domain 2-like protein.	Antiviral helicase.	0.917
A0A165TA02	A0A165UDC6	Ribosomal protein S5 domain 2-like protein.	TPR-like protein.	0.803
A0A165TA02	A0A165VD55	Ribosomal protein S5 domain 2-like protein.	RNase_PH domain-containing protein.	0.998
A0A165TA02	A0A165VEU1	Ribosomal protein S5 domain 2-like protein.	WD40 repeat-like protein.	0.715
A0A165TA02	A0A165VN02	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.999
A0A165TA02	A0A165VS93	Ribosomal protein S5 domain 2-like protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A165TA02	A0A165W196	Ribosomal protein S5 domain 2-like protein.	S1 motif domain-containing protein.	0.999
A0A165U2D6	A0A165P1Y5	Antiviral helicase.	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	0.657
A0A165U2D6	A0A165S771	Antiviral helicase.	RNase_PH domain-containing protein.	0.934