(14 nodes) Nonfunctional rRNA decay network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165VS93	Ribosomal protein S5 domain 2-like protein. (296 aa)
	A0A165NMF2	RNB-domain-containing protein; Belongs to the RNR ribonuclease family. (990 aa)
	A0A165P1Y5	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (423 aa)
	A0A165R2Y5	Uncharacterized protein. (89 aa)
	A0A165R375	Rrp44_CSD1 domain-containing protein. (159 aa)
	A0A165RHS2	Polyubiquitin-tagged protein recognition complex Npl4 component. (655 aa)
	A0A165RMN3	Uncharacterized protein. (309 aa)
	A0A165RQZ3	26S proteasome regulatory complex ATPase RPT6; Belongs to the AAA ATPase family. (424 aa)
	A0A165S771	RNase_PH domain-containing protein. (308 aa)
	A0A165TA02	Ribosomal protein S5 domain 2-like protein. (262 aa)
	A0A165TAU1	UFD1-domain-containing protein. (438 aa)
	A0A165UX46	HRDC domain-containing protein. (862 aa)
	A0A165VD55	RNase_PH domain-containing protein. (289 aa)
	A0A165VN02	Uncharacterized protein. (269 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165NMF2	A0A165S771	RNB-domain-containing protein; Belongs to the RNR ribonuclease family.	RNase_PH domain-containing protein.	0.957
A0A165NMF2	A0A165TA02	RNB-domain-containing protein; Belongs to the RNR ribonuclease family.	Ribosomal protein S5 domain 2-like protein.	0.969
A0A165NMF2	A0A165UX46	RNB-domain-containing protein; Belongs to the RNR ribonuclease family.	HRDC domain-containing protein.	0.926
A0A165NMF2	A0A165VD55	RNB-domain-containing protein; Belongs to the RNR ribonuclease family.	RNase_PH domain-containing protein.	0.974
A0A165NMF2	A0A165VN02	RNB-domain-containing protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.973
A0A165NMF2	A0A165VS93	RNB-domain-containing protein; Belongs to the RNR ribonuclease family.	Ribosomal protein S5 domain 2-like protein.	0.974
A0A165R2Y5	A0A165S771	Uncharacterized protein.	RNase_PH domain-containing protein.	0.936
A0A165R2Y5	A0A165TA02	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.954
A0A165R2Y5	A0A165UX46	Uncharacterized protein.	HRDC domain-containing protein.	0.890
A0A165R2Y5	A0A165VD55	Uncharacterized protein.	RNase_PH domain-containing protein.	0.961
A0A165R2Y5	A0A165VN02	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A165R2Y5	A0A165VS93	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.962
A0A165R375	A0A165S771	Rrp44_CSD1 domain-containing protein.	RNase_PH domain-containing protein.	0.936
A0A165R375	A0A165TA02	Rrp44_CSD1 domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.954
A0A165R375	A0A165UX46	Rrp44_CSD1 domain-containing protein.	HRDC domain-containing protein.	0.890
A0A165R375	A0A165VD55	Rrp44_CSD1 domain-containing protein.	RNase_PH domain-containing protein.	0.961
A0A165R375	A0A165VN02	Rrp44_CSD1 domain-containing protein.	Uncharacterized protein.	0.960
A0A165R375	A0A165VS93	Rrp44_CSD1 domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.962
A0A165RHS2	A0A165RQZ3	Polyubiquitin-tagged protein recognition complex Npl4 component.	26S proteasome regulatory complex ATPase RPT6; Belongs to the AAA ATPase family.	0.648
A0A165RHS2	A0A165TAU1	Polyubiquitin-tagged protein recognition complex Npl4 component.	UFD1-domain-containing protein.	0.999