(6 nodes) Noc complex network (Neolentinus lepideus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165VAU4	Nop14-like protein. (915 aa)
	A0A165NPL8	Ribosome biogenesis protein Noc4. (594 aa)
	A0A165Q711	RNA-binding domain-containing protein. (199 aa)
	A0A165SCH3	Noc2-domain-containing protein. (704 aa)
	A0A165T721	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (802 aa)
	A0A165VWN5	CBF-domain-containing protein. (1100 aa)

Your Current Organism:

Neolentinus lepideus

NCBI taxonomy Id: 1314782
Other names: N. lepideus HHB14362 ss-1, Neolentinus lepideus HHB14362 ss-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165NPL8	A0A165Q711	Ribosome biogenesis protein Noc4.	RNA-binding domain-containing protein.	0.875
A0A165NPL8	A0A165SCH3	Ribosome biogenesis protein Noc4.	Noc2-domain-containing protein.	0.886
A0A165NPL8	A0A165T721	Ribosome biogenesis protein Noc4.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.827
A0A165NPL8	A0A165VAU4	Ribosome biogenesis protein Noc4.	Nop14-like protein.	0.999
A0A165NPL8	A0A165VWN5	Ribosome biogenesis protein Noc4.	CBF-domain-containing protein.	0.790
A0A165Q711	A0A165NPL8	RNA-binding domain-containing protein.	Ribosome biogenesis protein Noc4.	0.875
A0A165Q711	A0A165SCH3	RNA-binding domain-containing protein.	Noc2-domain-containing protein.	0.995
A0A165Q711	A0A165T721	RNA-binding domain-containing protein.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.990
A0A165Q711	A0A165VAU4	RNA-binding domain-containing protein.	Nop14-like protein.	0.860
A0A165Q711	A0A165VWN5	RNA-binding domain-containing protein.	CBF-domain-containing protein.	0.951
A0A165SCH3	A0A165NPL8	Noc2-domain-containing protein.	Ribosome biogenesis protein Noc4.	0.886
A0A165SCH3	A0A165Q711	Noc2-domain-containing protein.	RNA-binding domain-containing protein.	0.995
A0A165SCH3	A0A165T721	Noc2-domain-containing protein.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.998
A0A165SCH3	A0A165VAU4	Noc2-domain-containing protein.	Nop14-like protein.	0.900
A0A165SCH3	A0A165VWN5	Noc2-domain-containing protein.	CBF-domain-containing protein.	0.995
A0A165T721	A0A165NPL8	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	Ribosome biogenesis protein Noc4.	0.827
A0A165T721	A0A165Q711	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	RNA-binding domain-containing protein.	0.990
A0A165T721	A0A165SCH3	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	Noc2-domain-containing protein.	0.998
A0A165T721	A0A165VAU4	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	Nop14-like protein.	0.865
A0A165T721	A0A165VWN5	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	CBF-domain-containing protein.	0.954